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Report for CCDS23331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23331.1 Public Mus musculus 9 Prtg 23 108 98 CCDS HistoryNCBI Gene:235472Re-query CCDS DB by CCDS ID:23331.1Re-query CCDS DB by GeneID:235472See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055535.8 ENSMUSP00000055815.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055535.8Link to Ensembl Protein Viewer:ENSMUSP00000055815.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055535Re-query CCDS DB by Protein ID:ENSMUSP00000055815
Original member Current member NCBI NM_175485.4 NP_780694.3 Accepted alive Link to Nucleotide Sequence:NM_175485.4Link to Protein Sequence:NP_780694.3Re-query CCDS DB by Nucleotide ID:NM_175485Re-query CCDS DB by Protein ID:NP_780694Link to BLAST:NP_780694.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780694.3 1191 Q2EY15 1191 100% 0 0

Chromosomal Locations for CCDS 23331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72807457 72807532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72809455 72809757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72842695 72842839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72844858 72844991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72847909 72848046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72848314 72848472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72849752 72849911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72851481 72851728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72854956 72855120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72856775 72857080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72858761 72858949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72890777 72890872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72891809 72891995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72892228 72892355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72893824 72893994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72904705 72904887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72906148 72906268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72907701 72907863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72910637 72910741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72911904 72912302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3576 nt):
ATGGCGCCTCCCGTGCGCCCGGGGATGCTGCCCCTGCTGCTGTTGCTGCTACTGCCGCCGCTCGGCTCGG
TTCCAGGAGTGTGGAGCTTTAGCGAACTGTTTTTCATGAAAGAACCACAGGATGCAACAGTCACAAGGAA
AGACCCAGTCGTTTTAGATTGCCAGGCACACGGAGAAGGCCCCATTAAGGTCACATGGTTGAAAAATGGA
GCAAAATTGTCCGAAAATAAACGGATCCAGGTTCTATCTAACGGCTCTCTATACATCAGTGAGGTGGAAG
GCAGGAGGGGAGAGCAATCGGATGAAGGATTTTATCAGTGTTTGGCAGTGAACAAATACGGGGCCATTCT
TAGTCAGAAAGCTCATCTGACATTGTCAACTATCTCTGCGTTTGAAGTCCATCCAGTGTCTACTGAGGTC
CATGAAGGAGGAGTTGCTAGATTTTCATGCAAGATTTCATCAACGCCGCCTGCAGTCATAACATGGGAAT
TTAATAGAACAGCCCTGCCTACAACCATGGACAGGGTGACTGCCCTGCCATCAGGAGTGTTGCAGATCTA
CGACGTTGGCCCGGAGGATGCTGGGAATTACCGCTGTGTTGCAGCTACTATAGCTCATAAGAGGAAAAGC
ATGGAGGCTTCGCTAACCATAGTTGCAGCTAATGAGACCAGATCCTTCTACATGCCAACCATTATAGCCA
GTCCACAGAATGTAACCGCATCTCTACATCAGACAGTTGTGCTAGAGTGTATGGCCACAGGATATCCCAG
ACCCATCATTTCCTGGAGCCGTCTTGATCACAAGTCCATTGATGTCTTCAACACTCGGGTACTTGGAAAT
GGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTATGTTTGTCGGGCCACCACCCCAG
GCACACGTAACTTCACAGTTGCTATGGCAACGTTAACTGTATTAGCTCCTCCTTCATTTGTCGAATGGCC
TGAAAGTTTAACAAGGCCACGAGCTGGCACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCCCTCACCC
AAAATGTCCTGGTTGAAAAATGGGAGAAGGATACATTCAAATGGCAGGATTAAAATGTACAACAGCAAAT
TGGTCATTAATCAGATTATCCCGGAAGACGATGCTATCTATCAGTGCATGGCTGAAAACAGCCAAGGATC
TGTTCTGTCTCGAGCCAGACTGACTGTGGTAATGTCGGAAGATAGACCCAGCGCTCCTTACAACGTTCAT
GCTGAGACCATGTCGAGCTCTGCTATCCTTCTGGCTTGGGAGAGACCACTGTACAATTCAGACAAGGTCA
TCGCCTACTCTGTACACTACATGAAGGCGGAAGGTTTAAATAACGAGGAATATCAGGTGGTCCTTGGAAA
CGACACGACTCATTACATCATTGATGACTTAGAACCCGACAGCAACTATACTTTCTACATTGTGGCGTAC
ATGCCGCTGGGGGCCAGCCAGATGTCGGATCATGTGACACAGAACACGCTAGAAGATGTGCCCCTAAGAC
CTCCCGAAATTAGCTTGACGAGTCGAAGTCCCACCGACATTCTCGTCTCCTGGCTGCCAATCCCGGCCAA
GTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTT
GTAGAACTCCCGGGGACCGTGCACGAGTACCTTCTGGAAGGCCTGAAGCCAGACAGTGTCTATCTGGTTC
GGATTACTGCAGCTACCCGTGTGGGGCTGGGAGAGTCGTCGGTGTGGACCTCACACAGGACGCCCAAGGC
TACGAGCGTGAAAGCCCCGAAGTCTCCTGAACTGCATTTGGAACCACTGAATTGTACTACCATCTCTGTG
AGGTGGCTGCAAGACACAGAGGACCCGGCCGCTATTCGGGGCTACAAGCTGTTTTATAAAGAGGAAGGGC
AGCAAGAACACGGACCTATCTTCCTAGACACCGGTGACCTGCTGTATACGCTCAGTGGCTTGGACCCCAG
AAGAAAATACCACGTGAGGCTCCTGGCTTACAACAACATGGAAGAAGGCTACCAGGCCGACCAGACTGTC
AGCACTCCCGGATGCGTGTCCGTCCGTGATCGCATGGTCCCTCCACCACCGCCACCCCACCATCTCTACG
CGAAGGCGAATACCTCCTCTTCCATCTTCCTGCACTGGAGGAGGCCTGCGTTCACCACCGCCCAAGTCAT
TAACTACACCATCCGCTGTAACCCTGTTGGCCTGCAGAATGCCTCTCTGGTTCTCTACCTGCAAACATCA
GAAACCCACATGCTGGTCCAAGGACTAGAACCAAACACCAAGTATGAATTTGCTGTCCGACTGCATGTGG
ATCAGCTGTCCAGTCCCTGGAGTCCTGTGGTCTACCATTCTACATTGCCAGAAGCACCCACAGGCCCCCC
GGTAGGGGTAAAGGTGACCCTGATAGAAGACGACACTGCCCTTGTTTCCTGGAAACCCCCAGATGGCCCA
GAGACAGTGGTGACACGCTACACCATCTTGTATGCTTCCAGGAAGGCCTGGATTGCGGGAGAGTGGCAGG
TTCTTCACCGAGAAGGGGCAATCACCATGGCTTTGCTGGAAAACCTGGTGGCAGGGAACGTGTACATTGT
CAAGATATCTGCGTCCAACGAGGTGGGAGAAGGGCCCTTTTCAAACTCCGTGGAGCTGGCCGTCCTCCCC
AAGGATGCTTCAGAGTCGAACCAGAGGCCCAAGCGTTTGGATTCTTCCAATGCCAAAGTTTATTCCGGCT
ATTACCATCTGGACCAAAAGTCAATGACGGGCATCGCAGTAGGCGTTGGCATAGCCTTGACCTGTATCCT
CATCTGTGTTCTCATCTTGATCTACCGAAGCAAAGCCAGGAAGTCATCCGCCTCTAAGACAGCGCAGAGT
GGAACCCAGCCGTTATCCCAAGCCAGTGCCTCTGTAGCAGCAGGGAGTGACATGGGGAAGAACCTGGAGA
GAGCTACAGAGACTGCAGAGTCCTTGGTACCCATGATGCCCAGCAGCTTCATTGACGCGAAGGGAGGGAC
TGACCTGATCATCAATAGCTACGGTCCTATAATTAAAAACAACACTAAGAAAAAGTGGCTTTTTTTCCAA
GACACTAAGAAAATCAAAGTTGAACAGACTCAAAGAAGATTTACTCAGGCCGTCTGCTTTTACCAGCCGG
GCACCACCGTGCTGATCAGCGATGAAGATTCCCCCGGCTCCCCAGGCCAGACCGCCAGCTTCCCAAGACC
TTTTGGGGCTACTGCCCTTGACACAGAGCATTCAGCGAACAGTGAAGGCAGCCATGAGACAGGGGATTCC
GGAAGGTTTTCCCATGAGTCCAATGATGAGATACACCTGTCCTCCGTCATCAGCAGCACGCCCCCCACCT
CGAATCCCCTCGCTGGTGGCGATTCTGATGGGGATGCTGCACCGAAGAAGCACGGAGACCCTGCGCAGCC
CTTGCCAGCTGAGCAGACCTCAGCTCCGCAGACATCTGCGGGGCTGCGATATGCTGCCGAGGGTTTTCCG
GTCTAG

Translation (1191 aa):
MAPPVRPGMLPLLLLLLLPPLGSVPGVWSFSELFFMKEPQDATVTRKDPVVLDCQAHGEGPIKVTWLKNG
AKLSENKRIQVLSNGSLYISEVEGRRGEQSDEGFYQCLAVNKYGAILSQKAHLTLSTISAFEVHPVSTEV
HEGGVARFSCKISSTPPAVITWEFNRTALPTTMDRVTALPSGVLQIYDVGPEDAGNYRCVAATIAHKRKS
MEASLTIVAANETRSFYMPTIIASPQNVTASLHQTVVLECMATGYPRPIISWSRLDHKSIDVFNTRVLGN
GNLIISDVKLQHAGVYVCRATTPGTRNFTVAMATLTVLAPPSFVEWPESLTRPRAGTARFVCQAEGIPSP
KMSWLKNGRRIHSNGRIKMYNSKLVINQIIPEDDAIYQCMAENSQGSVLSRARLTVVMSEDRPSAPYNVH
AETMSSSAILLAWERPLYNSDKVIAYSVHYMKAEGLNNEEYQVVLGNDTTHYIIDDLEPDSNYTFYIVAY
MPLGASQMSDHVTQNTLEDVPLRPPEISLTSRSPTDILVSWLPIPAKYRRGQVVLYRLSFRLSTENAIQV
VELPGTVHEYLLEGLKPDSVYLVRITAATRVGLGESSVWTSHRTPKATSVKAPKSPELHLEPLNCTTISV
RWLQDTEDPAAIRGYKLFYKEEGQQEHGPIFLDTGDLLYTLSGLDPRRKYHVRLLAYNNMEEGYQADQTV
STPGCVSVRDRMVPPPPPPHHLYAKANTSSSIFLHWRRPAFTTAQVINYTIRCNPVGLQNASLVLYLQTS
ETHMLVQGLEPNTKYEFAVRLHVDQLSSPWSPVVYHSTLPEAPTGPPVGVKVTLIEDDTALVSWKPPDGP
ETVVTRYTILYASRKAWIAGEWQVLHREGAITMALLENLVAGNVYIVKISASNEVGEGPFSNSVELAVLP
KDASESNQRPKRLDSSNAKVYSGYYHLDQKSMTGIAVGVGIALTCILICVLILIYRSKARKSSASKTAQS
GTQPLSQASASVAAGSDMGKNLERATETAESLVPMMPSSFIDAKGGTDLIINSYGPIIKNNTKKKWLFFQ
DTKKIKVEQTQRRFTQAVCFYQPGTTVLISDEDSPGSPGQTASFPRPFGATALDTEHSANSEGSHETGDS
GRFSHESNDEIHLSSVISSTPPTSNPLAGGDSDGDAAPKKHGDPAQPLPAEQTSAPQTSAGLRYAAEGFP
V


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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