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Report for CCDS23438.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23438.2 Public Mus musculus 9 Il20rb 23 108 98 CCDS HistoryNCBI Gene:213208Re-query CCDS DB by CCDS ID:23438.2Re-query CCDS DB by GeneID:213208See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23438.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098458.3 ENSMUSP00000096057.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098458.3Link to Ensembl Protein Viewer:ENSMUSP00000096057.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098458Re-query CCDS DB by Protein ID:ENSMUSP00000096057
Original member Current member NCBI NM_001033543.3 NP_001028715.2 Accepted alive Link to Nucleotide Sequence:NM_001033543.3Link to Protein Sequence:NP_001028715.2Re-query CCDS DB by Nucleotide ID:NM_001033543Re-query CCDS DB by Protein ID:NP_001028715Link to BLAST:NP_001028715.2

Chromosomal Locations for CCDS 23438.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100459125 100459241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100461390 100461532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100466213 100466363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100468323 100468447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100472998 100473188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100474876 100475002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100486256 100486328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGATTTCCCAGGGAGTCTGGACAAGTCCGTTCATGTGGTTTTTCTACAGCATGACCTCAGGTTTTCTCA
CGGATGCAGTGTCCGTTTTACCTGCCCCTCAGAACCTCTCTGTACAGTCAACCAACATGAAGCATCTCTT
GATGTGGAACCCAGTGACCCAGCCGGGGGAGACGGTGCTCTATTGTGTGGAGTATCAGGGGGAGTACGAG
AGCCTGTACATGAGCCACATCTGGATCCCCAGCAGTCAATGCTCACCGACCAAAAGTCTGGAGTGTGATG
TCACCGATGACATAACCGCCACAGTGCCATATAACTTCAGGGTCAAGGCCATGCTGGGCTCACAGACTTC
AGCCTGGAGCAACCTGGAGCACCCCTTTAACCGAAATGCAACTGTCCTCACCCCACCCAGGATGGAGGTC
ACTGAACATGGGCTGCATCTGGTTATTGAGCTGGAAGACCTGGGGCCCCAGTTTGAGTTCCTTGTGGTCT
ACTGGAGGAGGGAGCCTGGCGCCGCGGAACATGTTAAGATGGTGAGGAGTGGGGACATTCCGGTGCACCT
AGAAACCATGGAACCGGGGGCCATGTACTGTGTGAAGGCGCAGGCACTGGTGAAAGCCATCGGGAGGCAC
AGTGCCTTCAGCCAGCCTACGTGTGTGGAGATGCAAGGAGAGTCTCTTCCGCTGGCACTAGCTCTGTTTG
CGTTTGTTGGCTTCATGCTGATTCTCGTGGTTGTACTACTCTCCGTCTGGAAGATGGGCCAGCTGCTCCG
GTATTCTTGCTGCCCCGCCGTTGTCCTCCCAGACACCTTGAAAATAACCAGTTCGTCTCAGAAGCTGATC
AGCTGCAGGAAGGAGGAGGTGGACGCCTGTGCTGTGGCTGTGCTGTCCTCGGAGCATCTCTTTGGGGTCT
GGATCTCACAGACTTGA

Translation (308 aa):
MISQGVWTSPFMWFFYSMTSGFLTDAVSVLPAPQNLSVQSTNMKHLLMWNPVTQPGETVLYCVEYQGEYE
SLYMSHIWIPSSQCSPTKSLECDVTDDITATVPYNFRVKAMLGSQTSAWSNLEHPFNRNATVLTPPRMEV
TEHGLHLVIELEDLGPQFEFLVVYWRREPGAAEHVKMVRSGDIPVHLETMEPGAMYCVKAQALVKAIGRH
SAFSQPTCVEMQGESLPLALALFAFVGFMLILVVVLLSVWKMGQLLRYSCCPAVVLPDTLKITSSSQKLI
SCRKEEVDACAVAVLSSEHLFGVWISQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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