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Report for CCDS23457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23457.1 Public Mus musculus 9 Uba5 23 108 98 CCDS HistoryNCBI Gene:66663Re-query CCDS DB by CCDS ID:23457.1Re-query CCDS DB by GeneID:66663See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035166.11 ENSMUSP00000035166.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035166.11Link to Ensembl Protein Viewer:ENSMUSP00000035166.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035166Re-query CCDS DB by Protein ID:ENSMUSP00000035166
Original member Current member NCBI NM_025692.3 NP_079968.2 Accepted alive Link to Nucleotide Sequence:NM_025692.3Link to Protein Sequence:NP_079968.2Re-query CCDS DB by Nucleotide ID:NM_025692Re-query CCDS DB by Protein ID:NP_079968Link to BLAST:NP_079968.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079968.2 403 Q8VE47 403 100% 0 0

Chromosomal Locations for CCDS 23457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104047603 104047686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104049234 104049340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104049523 104049601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104049835 104049970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104054063 104054190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104054354 104054458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104055190 104055274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104055803 104055889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104056874 104056983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104060218 104060307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104060394 104060439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104062792 104062946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGCCGACTCGGTGGAGCGGCTGCGACAGCGGGTTGAGGAGCTGGAGCAGGAACTCGCCCGGGAGAGAA
CCCGGCGCTCTGGAGGGGACGGCCACTGCGGCCGGACCCGCATCCAGGAGATGAGCGACGAGGTGTTGGA
TTCCAATCCCTACAGCCGTCTGATGGCATTGAAACGGATGGGAATTGTCAGTGACTATAAGAAAATCCGT
ACCTACGCTGTAGCAATAGTAGGTGTTGGTGGAGTTGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG
GCATTGGTAAGCTGCTGCTCTTTGACTATGATAAGGTGGAGCTGGCCAACATGAATCGGCTTTTCTTCCA
GCCATATCAAGCAGGACTGAGTAAGGTCCACGCAGCAGAACACACCCTGAGGAACATTAACCCTGATGTT
CTGTTTGAAGTCCACAACTACAATATCACCACAGTGGAACACTTTGAACATTTCATGAATAGAATAAGTA
ATGGTGGATTAGAAGAAGGACAACCTGTTGACCTAGTTCTTAGCTGTGTGGACAACTTTGAAGCTCGAAT
GGCAATAAATACAGCTTGTAATGAACTTGGTCAGACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTT
TCCGGGCACATCCAGCTGATGATCCCTGGAGAGTCGGCTTGCTTCGCGTGTGCGCCACCACTTGTAGTTG
CTTCAAATATTGATGAAAAAACCCTGAAACGAGAAGGCGTCTGCGCAGCCAGTCTCCCCACCACCATGGG
GGTGGTGGCCGGGATCTTGGTACAAAATGTACTAAAGTTTCTGTTAAAATTTGGCACTGTCAGTTTTTAC
CTTGGATACAATGCAATGCAGGATTTTTTCCCTACCATGTTCATGAAGCCAAACCCTCAGTGTGATGACA
AAAACTGTAGAAAGCAACAAGAAGAATACAAGAAGAGGGCAGCAGCACTGCCCACGCAGGAGGCTGAGCC
CCAGGAGGAGGCAGAGGTGGTTCATGAGGACAACGAGTGGGGCATTGAGCTGGTGTCTGAGGTTTCAGAA
GAGGAACTGAAGAACTCTTCAGGTCCTGTTCCCACCTTACCTGAAGGCATTACAGTGGCATACACAGTCC
CAAAGAAGACGGAGGATTCGGCTTCTGAAGTAACAGTGGAAGACTCCGGCGAAAGCTTGGAAGATCTTAT
GGCCAGGATGAAGAATATGTAG

Translation (403 aa):
MADSVERLRQRVEELEQELARERTRRSGGDGHCGRTRIQEMSDEVLDSNPYSRLMALKRMGIVSDYKKIR
TYAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPYQAGLSKVHAAEHTLRNINPDV
LFEVHNYNITTVEHFEHFMNRISNGGLEEGQPVDLVLSCVDNFEARMAINTACNELGQTWMESGVSENAV
SGHIQLMIPGESACFACAPPLVVASNIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLKFGTVSFY
LGYNAMQDFFPTMFMKPNPQCDDKNCRKQQEEYKKRAAALPTQEAEPQEEAEVVHEDNEWGIELVSEVSE
EELKNSSGPVPTLPEGITVAYTVPKKTEDSASEVTVEDSGESLEDLMARMKNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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