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Report for CCDS23605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23605.1 Public Mus musculus 9 Ctdspl 23 108 98 CCDS HistoryNCBI Gene:69274Re-query CCDS DB by CCDS ID:23605.1Re-query CCDS DB by GeneID:69274See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073109.11 ENSMUSP00000072852.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073109.11Link to Ensembl Protein Viewer:ENSMUSP00000072852.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073109Re-query CCDS DB by Protein ID:ENSMUSP00000072852
Original member Current member NCBI NM_133710.3 NP_598471.3 Accepted alive Link to Nucleotide Sequence:NM_133710.3Link to Protein Sequence:NP_598471.3Re-query CCDS DB by Nucleotide ID:NM_133710Re-query CCDS DB by Protein ID:NP_598471Link to BLAST:NP_598471.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598471.3 276 P58465 276 100% 0 0

Chromosomal Locations for CCDS 23605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 118926862 118926940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119011235 119011389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119020012 119020044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119026937 119027038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119030196 119030252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119033536 119033628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119037361 119037546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119040524 119040649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGACGGTCCGGCCATCATCACCCAGGTGACCAACCCCAAGGAGGATGAGGCCCGGTCGCCCGTCGCGG
GCGAAAAAGCTTCCCAGCGCAACATCAGCCTAAAGAAGCAAAGGGGTCGGAGCATCCTTAGCTCTTTCTT
CTGCTGCTTCCGAGACTACAATGTGGAAGCCCCTCCGGCCAACAGCCCCAGTGTGCTTCCGCCACTGGTG
GAGGAGAACGGTGGGCTTCAGAAGGGTGACCAGAGGCAGGTCATTCCCGTACCAAGCCCACCAGCTAAAT
ACCTCCTTCCAGAGGTGACGGTGCTCGACTATGGAAAGAAATGTGTGGTCATTGATCTAGACGAAACCCT
GGTGCACAGTTCGTTTAAGCCCATTAGTAATGCTGACTTCATTGTTCCTGTTGAAATCGACGGAACCATA
CACCAGGTGTATGTGCTGAAGCGACCTCACGTGGACGAGTTCCTCCAGAGGATGGGGCAGCTCTTTGAGT
GTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCAGACCCTGTTGCCGACCTCCTGGACCGCTGGGGTGT
GTTCCGGGCCCGACTCTTCAGAGAATCCTGCGTGTTCCACCGTGGGAACTATGTGAAGGACTTGAGTCGC
CTGGGACGGGAGCTGAGCAAAGTGATCATCGTGGACAATTCTCCTGCCTCCTACATCTTCCATCCTGAGA
ATGCAGTGCCCGTGCAGTCCTGGTTTGACGACATGACAGACACGGAGCTGTTGGACCTCATCCCGTTCTT
CGAGGGCCTGAGCAGGGAAGACGATGTCTACAGCATGCTGCACAGACTCTGTAGCAGGTAG

Translation (276 aa):
MDGPAIITQVTNPKEDEARSPVAGEKASQRNISLKKQRGRSILSSFFCCFRDYNVEAPPANSPSVLPPLV
EENGGLQKGDQRQVIPVPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTI
HQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSR
LGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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