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Report for CCDS23687.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23687.2 Reviewed, update pending Mus musculus 10 Pcmt1 23 108 98 CCDS HistoryNCBI Gene:18537Re-query CCDS DB by CCDS ID:23687.2Re-query CCDS DB by GeneID:18537See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 23687.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 23687.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159917.7 ENSMUSP00000124932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159917.7Link to Ensembl Protein Viewer:ENSMUSP00000124932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159917Re-query CCDS DB by Protein ID:ENSMUSP00000124932
Original member NCBI NM_008786.3 NP_032812.2 Updated not alive Link to Nucleotide Sequence:NM_008786.3Link to Protein Sequence:NP_032812.2Re-query CCDS DB by Nucleotide ID:NM_008786Re-query CCDS DB by Protein ID:NP_032812
NCBI NM_008786.4 NP_032812.2 Updated not alive Link to Nucleotide Sequence:NM_008786.4Link to Protein Sequence:NP_032812.2Re-query CCDS DB by Nucleotide ID:NM_008786Re-query CCDS DB by Protein ID:NP_032812
NCBI NM_008786.5 NP_032812.3 Updated not alive Link to Nucleotide Sequence:NM_008786.5Link to Protein Sequence:NP_032812.3Re-query CCDS DB by Nucleotide ID:NM_008786Re-query CCDS DB by Protein ID:NP_032812
Current member NCBI NM_008786.6 NP_032812.3 Pending alive Link to Nucleotide Sequence:NM_008786.6Link to Protein Sequence:NP_032812.3Re-query CCDS DB by Nucleotide ID:NM_008786Re-query CCDS DB by Protein ID:NP_032812Link to BLAST:NP_032812.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032812.3 227 P23506-1 227 100% 0 0

Chromosomal Locations for CCDS 23687.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7638046 7638225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7640045 7640130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7640695 7640815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7644325 7644429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7647590 7647621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7649051 7649155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7663075 7663303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGCCGGGAGCGCGCATTGGCGGCAGTGGCAGCGACGGCAGTAACAGCGGCCGCTCGAGCGGGGACACCA
GCGGGGCGGTGACCGTGTGGGAGGTGGTCTCACTCTTGGGGAAACTGCTAGGGACCGTCGCCGCGCTGAA
GGTGGTTCTGTACCTGCTCCGGGTGTGCTTCGCGATGGCCTGGAAATCCGGCGGCGCCAGCCACTCGGAG
CTAATCCACAACCTCCGCAAGAATGGAATCATCAAGACAGATAAAGTATTTGAAGTGATGCTGGCTACAG
ACCGTTCCCACTATGCAAAATCTAACCCTTACATGGATTCTCCACAATCAATAGGTTTCCAGGCAACAAT
CAGTGCCCCTCATATGCACGCATATGCACTAGAACTTCTGTTTGACCAGCTGCATGAAGGTGCTAAAGCC
CTGGACGTGGGCTCTGGAAGTGGAATCCTCACCGCCTGTTTTGCACGGATGGTTGGAAATAGTGGAAAAG
TCATTGGAATTGATCACATTAAAGAACTAGTAGATGACTCAATAACTAATGTCAAAAAGGATGACCCAAT
GCTCCTGTCCTCGGGGCGAGTGCGGCTGGTGGTGGGTGATGGAAGAATGGGATACGCTGAAGAAGCCCCT
TACGACGCTATTCATGTGGGAGCTGCAGCCCCAGTTGTGCCCCAGGCATTAATAGACCAGTTAAAGCCTG
GTGGAAGATTGATATTGCCAGTCGGTCCTGCAGGAGGAAACCAAATGTTGGAGCAGTATGACAAGCTACA
AGATGGCAGTGTCAAAATGAAACCTCTCATGGGGGTGATATACGTGCCTTTAACAGATAAAGAAAAGCAG
TGGTCCAGGTGGAAGTGA

Translation (285 aa):
MPGARIGGSGSDGSNSGRSSGDTSGAVTVWEVVSLLGKLLGTVAALKVVLYLLRVCFAMAWKSGGASHSE
LIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKA
LDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLVVGDGRMGYAEEAP
YDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ
WSRWK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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