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Report for CCDS23754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23754.1 Public Mus musculus 10 Epb41l2 23 108 98 CCDS HistoryNCBI Gene:13822Re-query CCDS DB by CCDS ID:23754.1Re-query CCDS DB by GeneID:13822See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053748.15 ENSMUSP00000055122.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053748.15Link to Ensembl Protein Viewer:ENSMUSP00000055122.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053748Re-query CCDS DB by Protein ID:ENSMUSP00000055122
Original member Current member EBI ENSMUST00000092645.6 ENSMUSP00000090314.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092645.6Link to Ensembl Protein Viewer:ENSMUSP00000090314.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000092645Re-query CCDS DB by Protein ID:ENSMUSP00000090314
Original member NCBI NM_001199265.1 NP_001186194.1 Updated not alive Link to Nucleotide Sequence:NM_001199265.1Link to Protein Sequence:NP_001186194.1Re-query CCDS DB by Nucleotide ID:NM_001199265Re-query CCDS DB by Protein ID:NP_001186194
Current member NCBI NM_001199265.2 NP_001186194.1 Accepted alive Link to Nucleotide Sequence:NM_001199265.2Link to Protein Sequence:NP_001186194.1Re-query CCDS DB by Nucleotide ID:NM_001199265Re-query CCDS DB by Protein ID:NP_001186194Link to BLAST:NP_001186194.1
Original member NCBI NM_013511.3 NP_038539.2 Updated not alive Link to Nucleotide Sequence:NM_013511.3Link to Protein Sequence:NP_038539.2Re-query CCDS DB by Nucleotide ID:NM_013511Re-query CCDS DB by Protein ID:NP_038539
Current member NCBI NM_013511.4 NP_038539.2 Accepted alive Link to Nucleotide Sequence:NM_013511.4Link to Protein Sequence:NP_038539.2Re-query CCDS DB by Nucleotide ID:NM_013511Re-query CCDS DB by Protein ID:NP_038539Link to BLAST:NP_038539.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186194.1 988 O70318 988 100% 0 0
NP_038539.2 988 O70318 988 100% 0 0

Chromosomal Locations for CCDS 23754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 25441587 25442057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25443742 25443954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25460792 25460896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25468096 25468138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25469196 25469271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25471419 25471637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25473076 25473163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25479009 25479161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25479668 25479765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25484208 25484380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25488951 25489093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25493567 25493629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25495445 25495591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25501824 25502387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25504137 25504259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25506175 25506273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25507777 25507857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 25512973 25513080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2967 nt):
ATGACTACTGAAGTTGGCTCTGCATCTGAAGTGAAGAAGGGCTCTGACCAGGCTGGAGCAGATGCCTCCA
AGGAGAAAGCTAAAGAAGTAGAAAATGAGCAGACTCCAGTATCTGAGCCAGAGGAAGAAAAGGGTTCCCA
GCCAGGTCCTCCGGTTGAGAGGCAAAGCACTCCCCGCCTGCGGAAACGAGGGAAGGATCCGTCTGAGAAC
AGGGGCATCTCTCGATTCATACCCCCGTGGCTTAAGAAGCAGAGGTCTTACAATTTAGTAGTAGCCAAAG
ATGGAGGAGATAAAAAAGAGCCTACTCAAGCTGACGTGGAAGACCAGATCTTAGGCAAAGAGGAATCCCT
TCCTGAAGAAGAGAGTCGGGCCAAGGGTGACGCAGAAGAAATGGCTCAGAGGAAGCACCTGGAGGTTCAG
GTGGAGGTCAGGGAAGCAAAACCAGCCTTGAAAAGCAGCGTGGAGACCCAGCCTGCTGAAGAAGTGAGGA
AGGACAAGGAGGAAACGATACAAGACACACAGGAAGAGAAACTGGAAGGAGGTGCAGCCAAAAGGGAGAC
AAAGGAAGTACAGACAAGTGAGCTGAAGGCAGAGGTGGCCTCTCAGAAAGCTACCAAGAAGACCAAGACT
GTCCTGGCCAAAGTGACCCTTCTAGATGGCACGGAATACAGCTGTGACCTTGAGAAACGTGCCAAGGGAC
AAGTGTTGTTTGACCGAGTGTGCGAGCACCTGAACCTCTTGGAGAAGGACTACTTTGGACTTCTATTTCA
GGATCATCCTGAGCAGAAAAACTGGCTAGATCCTGCAAAGGAAATAAAGAGACAGCTGAAAAATCTTCCC
TGGCTGTTCACTTTCAATGTGAAATTTTATCCTCCAGATCCTTCTCAGCTGACTGAAGATATCACCAGAT
ACTTCTTGTGCCTTCAGCTAAGGCAGGACATCGCCTCTGGCCGCCTGCCCTGCTCCTTTGTGACTCACGC
CCTCTTGGGATCCTACACCTTGCAGGCCGAGCATGGGGACTATGACCCAGAAGAATATGACAGTATTGAT
CTTGGTGACTTCCAGTTTGCCCCGGCCCACACCAAGGAGTTGGAGGAAAAGGTGTCAGAACTGCATAAAA
CTCACAGGGGCTTATCTCCAGCACAAGCCGACTCTCAGTTCTTAGAGAACGCAAAGAGGCTTTCCATGTA
CGGTGTTGACCTGCACCATGCCAAGGACTCTGAAGGTGTGGACATCAAGCTGGGTGTGTGTGCCAATGGC
CTTCTCATTTACAAAGACAGACTAAGGATCAATCGTTTTGCTTGGCCGAAGATTTTGAAAATTTCCTATA
AGCGCAGTAATTTCTACATTAAAGTTAGACCAGCAGAGCTGGAACAGTTTGAGAGTACCATTGGATTCAA
ATTGCCAAACCACCGGGCAGCTAAACGGCTATGGAAGGTGTGTGTGGAACATCACACTTTCTACAGGCTT
GTGTCTCCAGAGCAGCCACCAAAGACCAAGTTCTTGACCCTGGGGTCCAAATTCCGCTACAGCGGCCGCA
CGCAGGCACAGACCAGAGAAGCAAGTACCCTCATAGACAGGCCGGCACCACAATTTGAGCGTGCCTCTAG
TAAACGTGTCTCGAGGAGCCTAGACGGAGCCCCGATTGGTGTTGTGGACCAAAGCCCTCCTGGAGAGGGC
TCAGTGCCTGGCCCTGGAGTTATCAGCTATACTACCATCCAGGATGGCCGGAGGGACAGCAAAAGCCCAA
CAAAAGCTACACCCCTGCCCGCTGAGGGAAAGAAAAATACCTTGAGAGTAGACGGGGATAATATTTATGT
CAGACATAGCAATTTAATGTTGGAGGACCTGGATAAGGCCCAGGAGGCCATTCTGAAACATCAGGCTAGC
ATTAGTGAACTCAAGCGCAATTTCATGGCGTCCACACCTGAGCCTCGCCCCAGTGAATGGGAGAAGCGGC
GGGTCACACCTCTGCCTTTCCAACCACAAGCGAGTTCACATGAGACTCTGAATGTAGTGGAGGAGAAGAA
GCGGGCAGAGGTTGGGAAAGACGAAAGCGTAATCACAGAAGAAATGAATGGTAAAGAGATGTCACCGGGG
CATGGTCCTGGGGAGACTCGTAAGGTGGAGCCTGTGGCACACAAAGACTCCACCTCCCTGTCTTCTGAGA
GCAGCAGCAGCAGCAGTGAGAGTGAGGAGGACGTGGGAGAGTACCAGCCCCACCACCGAGTGACCGAGGG
CACCATAAGGGAAGAGCAGGAGGAGTGTGATGAAGAGCTGGAGGAAGAGCCCGGCCAAGGAGCCAAGGTA
GTAGAGAGGGAGGCAGCAGTGCCCGACGCCGTCCCAGACAGACAAGCAGGGGCCAGTGTGCTCCCAGTAG
AAACAGAGGCCCAGGAACATGTAGTTGCCCAAAAGTTACCTGGAGAAAAGGGTGCACACGGAGGCACTGC
TGAGCAGGACCCGAGAGAAGAAGCAGAGGAAGACCCGCACAGAGTTAATGGAGAGGTGCCCCATCTTGAC
CTTGATGGTTTGCCAGAGATTATTTGTTGTTCAGAGCCACCAGTGGTAAAAACAGAGATGGTAACAATTT
CTGATGCCTCACAAAGGACAGAAATCTCCACCAAGGAAGTCCCCATTGTTCAAACTGAGACCAAAACCAT
CACATATGAGTCTCCACAGATTGACGGCGGGGCTGGTGGTGATTCGGGCGTGTTACTGACCGCACAAACC
ATCACATCTGAGTCCGCGTCAACAACGACAACCACACACATCACCAAGACTGTGAAAGGTGGGATCTCTG
AAACACGAATTGAGAAACGCATTGTGATCACAGGAGACGCAGCTCTGGATCATGATCAGGCGCTGGCTCA
GGCCATACGGGAAGCGAGAGAGCAGCACCCTGATATGTCGGTCACAAGGGTGGTAGTGCACAAAGAAACA
GAGTTGGCGGAGGAAGGAGAAGAATAA

Translation (988 aa):
MTTEVGSASEVKKGSDQAGADASKEKAKEVENEQTPVSEPEEEKGSQPGPPVERQSTPRLRKRGKDPSEN
RGISRFIPPWLKKQRSYNLVVAKDGGDKKEPTQADVEDQILGKEESLPEEESRAKGDAEEMAQRKHLEVQ
VEVREAKPALKSSVETQPAEEVRKDKEETIQDTQEEKLEGGAAKRETKEVQTSELKAEVASQKATKKTKT
VLAKVTLLDGTEYSCDLEKRAKGQVLFDRVCEHLNLLEKDYFGLLFQDHPEQKNWLDPAKEIKRQLKNLP
WLFTFNVKFYPPDPSQLTEDITRYFLCLQLRQDIASGRLPCSFVTHALLGSYTLQAEHGDYDPEEYDSID
LGDFQFAPAHTKELEEKVSELHKTHRGLSPAQADSQFLENAKRLSMYGVDLHHAKDSEGVDIKLGVCANG
LLIYKDRLRINRFAWPKILKISYKRSNFYIKVRPAELEQFESTIGFKLPNHRAAKRLWKVCVEHHTFYRL
VSPEQPPKTKFLTLGSKFRYSGRTQAQTREASTLIDRPAPQFERASSKRVSRSLDGAPIGVVDQSPPGEG
SVPGPGVISYTTIQDGRRDSKSPTKATPLPAEGKKNTLRVDGDNIYVRHSNLMLEDLDKAQEAILKHQAS
ISELKRNFMASTPEPRPSEWEKRRVTPLPFQPQASSHETLNVVEEKKRAEVGKDESVITEEMNGKEMSPG
HGPGETRKVEPVAHKDSTSLSSESSSSSSESEEDVGEYQPHHRVTEGTIREEQEECDEELEEEPGQGAKV
VEREAAVPDAVPDRQAGASVLPVETEAQEHVVAQKLPGEKGAHGGTAEQDPREEAEEDPHRVNGEVPHLD
LDGLPEIICCSEPPVVKTEMVTISDASQRTEISTKEVPIVQTETKTITYESPQIDGGAGGDSGVLLTAQT
ITSESASTTTTTHITKTVKGGISETRIEKRIVITGDAALDHDQALAQAIREAREQHPDMSVTRVVVHKET
ELAEEGEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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