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Report for CCDS23758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23758.1 Public Mus musculus 10 Themis 23 108 98 CCDS HistoryNCBI Gene:210757Re-query CCDS DB by CCDS ID:23758.1Re-query CCDS DB by GeneID:210757See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056097.10 ENSMUSP00000060129.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056097.10Link to Ensembl Protein Viewer:ENSMUSP00000060129.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056097Re-query CCDS DB by Protein ID:ENSMUSP00000060129
Original member Current member NCBI NM_178666.6 NP_848781.1 Accepted alive Link to Nucleotide Sequence:NM_178666.6Link to Protein Sequence:NP_848781.1Re-query CCDS DB by Nucleotide ID:NM_178666Re-query CCDS DB by Protein ID:NP_848781Link to BLAST:NP_848781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848781.1 636 Q8BGW0-1 636 100% 0 0

Chromosomal Locations for CCDS 23758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 28668660 28668750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28722475 28722636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28761155 28761613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28781691 28782742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28863300 28863446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGGCTTTATCTCTGGAAGAATTTGTCTACTCCCTTGACCTGAGGACCCTCCCCAGGGTCCTAGAAATCC
AGTCAGGCATCTACTTTGAAGGGTCTGTTTATGAGATGTTTGGCAATGAATGCTGTCTGTCAACAGGAGA
AGTGATTAAAATCACCGGTCTCAAAATTAAGAAGATGATGGCTGAAATTTGTGAGGGCGCTATTGGAGGT
TGTGAGTCTCAGAAGCCTTTTGAGCTGCCCATGAATTTTCCAGGTCTCTTTAAGGTCATGGCTGATAAAA
CTCCATACCTGTCAATTGAAGAAATCACAAGAACCGTTAATATTGGACCCAGCAGACTAGGTCATCCTTG
CTTTTATCACCTGAAGGATATAAAACTAGAGAATCTCATTATTAAGCAGGGTGAGCCAATCCGGTTCAAC
TCAGTTGAAGAGATTAATGGAGAAACGCTGGTGAATTGTGGTGTGGTAAGGAATCATCAGAGCCACTCAT
TTACTTTGCCATTGTCACAAGAAGGAGAATTTTATGAGTGTGAGGATGAACATATCTATACCCTAAAAGA
AATTGTTGAATGGAAGATTCCCAAGAACAGAACACGGACAGTGAAACTTACAGATTTCTCGAATAAGTGG
GACTCAACCAATCCATTCCCAGAAGACTTTTATGGTACACTGATTCTCAAACCTGTTTATGAAATCCAAG
GTGTGCTGAAATTTCAAAAGGACATAGTCCGGATTCTCCCAAGTTTAGACGTTGAAGTCAAAGATATTAC
TGATTCTTATGATGCTAACTGGTTTCTTCAGTTGCTGTCTACGGACGACCTTTTTGAAATGACCAGCAAA
GAGTTTCCTGTAGTAGCTGAAGTTGTCGAAATATCTCAAGGGAACCACCTGCCCCAAAGTATTTTGCAGC
GAGAGAAAACCATTGTCATCCACAAAAAGTACCAGGCTTCGAGGATCTTAGCTTCAGAAATTCGCAGCAA
TTTCCCTAAAAGACACTTCTTGATCCCTATTAGCTACAAAGGCAAGTTCAAAAGAAGACCACGGGAGTTC
CCCACGGCCTATGACCTGCAGATAGCTAAGAGCAGGAAAGAAACTCTCCACGTGGTGGCCACCAAAGCTT
TCCATACACTTCACAAGGAGCTGTCCCCTGTGTCTGTTGGAGACCAGTTTCTAGTGCATCATTCAGAGAC
CACAGAAGTTGTCTTTGAGGGGACAAGAAAAGTAAACGTTCTGACCTGTGAAAAAGTCCTCAATAAGACC
CGTGAAGATGCACAGCTTCCTCTATACATGGAAGGAGGTTTTGTAGAGGTGATTCATGATAAGAAACAGT
ATCAGATTTCCGAGCTCTGTACCCAGTTTTGCTGGCCCTTCAATGTGAAGGTGGCTGTGAGAGATCTCTC
CATTAAAGATGACATTTTGGCAGCTACCCCAGGACTTCAGTTAGAGGAGGACATCACAGATTCTTATCTA
CTTATCAGTGACTTTGCAAATCCTGAGGAATGTTGGGAAATTCCCATGAGCCGCTTGAATATGACTGTTC
GACTAGTTAATGGTAGCAGTTTGCCTGCAGATGCAGGGCTACTTCAAGTCAGGAGTTTTGTAGAAGAGAT
TACAGAAGAACAGTATTACATGATGAGGAGGTACGAAAGTTCTCTATCACATCCCCCACCTCGCCCTCCC
AAACATCCCTCAGCTGAGGAAATGAAGCTCACCTTGCTCAGCTTAGCAGAAGAGAGAACAATAAATCTGC
CCAAGTCTCTCAAGAGTCACCATGTAGACAGACCCAAGAAGCTTCCCTCAGATGAAAGTGGCCAGGATTC
AAGAGCTCCAGTTGGTTTTCAGAATGATGTGGCTGATGTGGAGAGACAGAAGAGCAAGCATGGGCCACTG
CAGCCGCAAGCACCACTGTGA

Translation (636 aa):
MALSLEEFVYSLDLRTLPRVLEIQSGIYFEGSVYEMFGNECCLSTGEVIKITGLKIKKMMAEICEGAIGG
CESQKPFELPMNFPGLFKVMADKTPYLSIEEITRTVNIGPSRLGHPCFYHLKDIKLENLIIKQGEPIRFN
SVEEINGETLVNCGVVRNHQSHSFTLPLSQEGEFYECEDEHIYTLKEIVEWKIPKNRTRTVKLTDFSNKW
DSTNPFPEDFYGTLILKPVYEIQGVLKFQKDIVRILPSLDVEVKDITDSYDANWFLQLLSTDDLFEMTSK
EFPVVAEVVEISQGNHLPQSILQREKTIVIHKKYQASRILASEIRSNFPKRHFLIPISYKGKFKRRPREF
PTAYDLQIAKSRKETLHVVATKAFHTLHKELSPVSVGDQFLVHHSETTEVVFEGTRKVNVLTCEKVLNKT
REDAQLPLYMEGGFVEVIHDKKQYQISELCTQFCWPFNVKVAVRDLSIKDDILAATPGLQLEEDITDSYL
LISDFANPEECWEIPMSRLNMTVRLVNGSSLPADAGLLQVRSFVEEITEEQYYMMRRYESSLSHPPPRPP
KHPSAEEMKLTLLSLAEERTINLPKSLKSHHVDRPKKLPSDESGQDSRAPVGFQNDVADVERQKSKHGPL
QPQAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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