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Report for CCDS23870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23870.1 Public Mus musculus 10 Ascc1 23 108 98 CCDS HistoryNCBI Gene:69090Re-query CCDS DB by CCDS ID:23870.1Re-query CCDS DB by GeneID:69090See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050516.13 ENSMUSP00000052351.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050516.13Link to Ensembl Protein Viewer:ENSMUSP00000052351.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050516Re-query CCDS DB by Protein ID:ENSMUSP00000052351
Original member Current member EBI ENSMUST00000164083.3 ENSMUSP00000126301.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164083.3Link to Ensembl Protein Viewer:ENSMUSP00000126301.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164083Re-query CCDS DB by Protein ID:ENSMUSP00000126301
Original member Current member NCBI NM_001199187.2 NP_001186116.1 Accepted alive Link to Nucleotide Sequence:NM_001199187.2Link to Protein Sequence:NP_001186116.1Re-query CCDS DB by Nucleotide ID:NM_001199187Re-query CCDS DB by Protein ID:NP_001186116Link to BLAST:NP_001186116.1
Original member Current member NCBI NM_026937.3 NP_081213.1 Accepted alive Link to Nucleotide Sequence:NM_026937.3Link to Protein Sequence:NP_081213.1Re-query CCDS DB by Nucleotide ID:NM_026937Re-query CCDS DB by Protein ID:NP_081213Link to BLAST:NP_081213.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186116.1 356 Q9D8Z1 356 100% 0 0
NP_081213.1 356 Q9D8Z1 356 100% 0 0

Chromosomal Locations for CCDS 23870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 60004819 60004927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60007727 60007826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60012462 60012559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60013596 60013774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60042121 60042257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60049752 60049871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60062460 60062584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60064323 60064408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60098093 60098209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGATGTTCTACGCCCACAGATTGTAACGTTCGATGGACGGAATTATAGAAAGAATCCCATCCAGGAGA
AACAGTACCAACATGAAGAAGACGAGGATTTCTATCCTGACTCCATGGAATACTCTGATGAGCCCTGCGG
TGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAAG
CACATAGTTGGAAAGAGAGGGGATACCAAGAAAAAGATAGAAGTGGAGACTAAAACATCTATTAACATTC
CGAAGCATGGGCATGAAGGGGAAATCGTGATCACTGGTCAGCATCGAAATGGCGTGGTCTCAGCGCGAAC
ACGGATCGACGTGCTCCTGGACACGTTCAGGAGGAGGCAGCCTTTTACCCACTTCCTTTCCTTCTTCCTC
AATGAAGTTGAGGTTCAGGAACGGTTTCTGATGTTCCAGGAGGAGGTGCTGAGGAAGTGCTCCAAGGATC
GTGGAGTTGATAGCACCATTTTTCAGAACCCCAAAAAGCTTCACCTAACTATTGGGATGTTGGTACTTCT
AAGTGAGCAGGAGATCCAGCAGACGTGTGAGATCCTGCAGCGCTGTAAAGAGGAATTCATTAATGACATT
TCTGGAGGCAGACCCCTGGAAGTCGAGATGGCAGGCATCGAATACATGAATGACGATCCTGCTATGGTGG
ATGTTCTTTATGCCAAAGTCCACATGAAAGATGGCTCCAACAGGCTGCAGGAGCTGGTTGATCGAGTGCT
GGAGCGTTTTCAGTCCCTGGGACTCATCGTGAAAGAGTGGACCAGTGTGAAACTGCACGCCACGGTCATG
AACACACTGCTCAGGAAAGACCCCAACGCGGAAGGCAGGTACAATCTCTACACAGCAGATGGCAAATATA
TCTTCAAGGAGAGAGAGTCTTTTGATGGCCGGAACATTTTAAAGACATTTGAGAACTTCTACTTTGGTTC
CCTGAGGCTCAATTCTATTCACATCTCCCAGAGGTTCACGGTGGACAGCTTTGGAAACTATGCCTCCTGC
GGACATGTTGACTTCTCCTGA

Translation (356 aa):
MDVLRPQIVTFDGRNYRKNPIQEKQYQHEEDEDFYPDSMEYSDEPCGAYEVAQTPHGFRATVSAPSLLYK
HIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSARTRIDVLLDTFRRRQPFTHFLSFFL
NEVEVQERFLMFQEEVLRKCSKDRGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDI
SGGRPLEVEMAGIEYMNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSLGLIVKEWTSVKLHATVM
NTLLRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQRFTVDSFGNYASC
GHVDFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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