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Report for CCDS23962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23962.1 Public Mus musculus 10 Dnmt3l 23 108 98 CCDS HistoryNCBI Gene:54427Re-query CCDS DB by CCDS ID:23962.1Re-query CCDS DB by GeneID:54427See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000746.11 ENSMUSP00000000746.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000746.11Link to Ensembl Protein Viewer:ENSMUSP00000000746.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000746Re-query CCDS DB by Protein ID:ENSMUSP00000000746
Original member Current member EBI ENSMUST00000151242.7 ENSMUSP00000116970.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151242.7Link to Ensembl Protein Viewer:ENSMUSP00000116970.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151242Re-query CCDS DB by Protein ID:ENSMUSP00000116970
Original member Current member EBI ENSMUST00000138785.7 ENSMUSP00000121562.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138785.7Link to Ensembl Protein Viewer:ENSMUSP00000121562.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138785Re-query CCDS DB by Protein ID:ENSMUSP00000121562
Original member Current member NCBI NM_001081695.2 NP_001075164.1 Accepted alive Link to Nucleotide Sequence:NM_001081695.2Link to Protein Sequence:NP_001075164.1Re-query CCDS DB by Nucleotide ID:NM_001081695Re-query CCDS DB by Protein ID:NP_001075164Link to BLAST:NP_001075164.1
Original member Current member NCBI NM_001284197.1 NP_001271126.1 Accepted alive Link to Nucleotide Sequence:NM_001284197.1Link to Protein Sequence:NP_001271126.1Re-query CCDS DB by Nucleotide ID:NM_001284197Re-query CCDS DB by Protein ID:NP_001271126Link to BLAST:NP_001271126.1
Original member Current member NCBI NM_019448.4 NP_062321.1 Accepted alive Link to Nucleotide Sequence:NM_019448.4Link to Protein Sequence:NP_062321.1Re-query CCDS DB by Nucleotide ID:NM_019448Re-query CCDS DB by Protein ID:NP_062321Link to BLAST:NP_062321.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075164.1 421 Q9CWR8 421 100% 0 0
NP_001271126.1 421 Q9CWR8 421 100% 0 0
NP_062321.1 421 Q9CWR8 421 100% 0 0

Chromosomal Locations for CCDS 23962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78050083 78050203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78050598 78050684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78050916 78050960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78051831 78051910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78051992 78052104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78052712 78052883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78053929 78054016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78054972 78055066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78056845 78056920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78057268 78057407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78059647 78059732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78063187 78063349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGGTTCCCGGGAGACACCTTCTTCTTGCTCTAAGACCCTTGAAACCTTGGACCTGGAGACTTCCGACA
GCTCTAGCCCTGATGCTGACAGTCCTCTGGAAGAGCAATGGCTGAAATCCTCCCCAGCCCTGAAGGAGGA
CAGTGTGGATGTGGTACTGGAAGACTGCAAAGAGCCTCTGTCCCCCTCCTCGCCTCCGACAGGCAGAGAG
ATGATCAGGTACGAAGTCAAAGTGAACCGACGGAGCATTGAAGACATCTGCCTCTGCTGTGGAACTCTCC
AGGTGTACACTCGGCACCCCTTGTTTGAGGGAGGGTTATGTGCCCCATGTAAGGATAAGTTCCTGGAGTC
CCTCTTCCTGTATGATGATGATGGACACCAGAGTTACTGCACCATCTGCTGTTCCGGGGGTACCCTGTTC
ATCTGTGAGAGCCCCGACTGTACCAGATGCTACTGTTTCGAGTGTGTGGACATCCTGGTGGGCCCCGGGA
CCTCAGAGAGGATCAATGCCATGGCCTGCTGGGTTTGCTTCCTGTGCCTGCCCTTCTCACGGAGTGGACT
GCTGCAGAGGCGCAAGAGGTGGCGGCACCAGCTGAAGGCCTTCCATGATCAAGAGGGAGCGGGCCCTATG
GAGATATACAAGACAGTGTCTGCATGGAAGAGACAGCCAGTGCGGGTACTGAGCCTTTTTAGAAATATTG
ATAAAGTACTAAAGAGTTTGGGCTTTTTGGAAAGCGGTTCTGGTTCTGGGGGAGGAACGCTGAAGTACGT
GGAAGATGTCACAAATGTCGTGAGGAGAGACGTGGAGAAATGGGGCCCCTTTGACCTGGTGTACGGCTCG
ACGCAGCCCCTAGGCAGCTCTTGTGATCGCTGTCCCGGCTGGTACATGTTCCAGTTCCACCGGATCCTGC
AGTATGCGCTGCCTCGCCAGGAGAGTCAGCGGCCCTTCTTCTGGATATTCATGGACAATCTGCTGCTGAC
TGAGGATGACCAAGAGACAACTACCCGCTTCCTTCAGACAGAGGCTGTGACCCTCCAGGATGTCCGTGGC
AGAGACTACCAGAATGCTATGCGGGTGTGGAGCAACATTCCAGGGCTGAAGAGCAAGCATGCGCCCCTGA
CCCCAAAGGAAGAAGAGTATCTGCAAGCCCAAGTCAGAAGCAGGAGCAAGCTGGACGCCCCGAAAGTTGA
CCTCCTGGTGAAGAACTGCCTTCTCCCGCTGAGAGAGTACTTCAAGTATTTTTCTCAAAACTCACTTCCT
CTTTAG

Translation (421 aa):
MGSRETPSSCSKTLETLDLETSDSSSPDADSPLEEQWLKSSPALKEDSVDVVLEDCKEPLSPSSPPTGRE
MIRYEVKVNRRSIEDICLCCGTLQVYTRHPLFEGGLCAPCKDKFLESLFLYDDDGHQSYCTICCSGGTLF
ICESPDCTRCYCFECVDILVGPGTSERINAMACWVCFLCLPFSRSGLLQRRKRWRHQLKAFHDQEGAGPM
EIYKTVSAWKRQPVRVLSLFRNIDKVLKSLGFLESGSGSGGGTLKYVEDVTNVVRRDVEKWGPFDLVYGS
TQPLGSSCDRCPGWYMFQFHRILQYALPRQESQRPFFWIFMDNLLLTEDDQETTTRFLQTEAVTLQDVRG
RDYQNAMRVWSNIPGLKSKHAPLTPKEEEYLQAQVRSRSKLDAPKVDLLVKNCLLPLREYFKYFSQNSLP
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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