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Report for CCDS23978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23978.1 Public Mus musculus 10 Spmap2 23 108 98 CCDS HistoryNCBI Gene:21830Re-query CCDS DB by CCDS ID:23978.1Re-query CCDS DB by GeneID:21830See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077433.12 ENSMUSP00000076647.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077433.12Link to Ensembl Protein Viewer:ENSMUSP00000076647.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077433Re-query CCDS DB by Protein ID:ENSMUSP00000076647
Original member NCBI NM_199226.1 NP_954696.1 Updated not alive Link to Nucleotide Sequence:NM_199226.1Link to Protein Sequence:NP_954696.1Re-query CCDS DB by Nucleotide ID:NM_199226Re-query CCDS DB by Protein ID:NP_954696
Current member NCBI NM_199226.2 NP_954696.1 Accepted alive Link to Nucleotide Sequence:NM_199226.2Link to Protein Sequence:NP_954696.1Re-query CCDS DB by Nucleotide ID:NM_199226Re-query CCDS DB by Protein ID:NP_954696Link to BLAST:NP_954696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954696.1 351 Q9JMB1-2 351 100% 0 0

Chromosomal Locations for CCDS 23978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79576528 79576766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79579939 79580098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79583738 79583855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79584691 79584760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79585393 79585454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79586231 79586350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79586780 79587066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGGGGAACTTGGTGAACACCGGGCCAGTTTGCTCAGTAACCCAATCCCGGAGGTCAAGACTTTGGGAG
AGTTAAAGCAGGGACAGAACAATGGCAATTTGGACCTTGAGAGCGAGCCATTTGGGAGCCATTGGTTGCA
GGGCTCTAAGGCCACTACAGGGCGAACCTCAGAAGAACCAGAGGAGGAAATCCCCCCAGAGGAGATGGCT
GGGGAAGAGCTCCCGGAGACCTCCAATCTGGATGGTCCTCTTCAACAAGACCTGGAGGTGGAAGTGGTTG
AAATGAGCCATCTGTCCATCACTGAGCGGACTCCCAGTGTCTCCACAGCCAAGGGCAGGAAAAAGAGGAG
CCGGAGGCTGCTGGAGCTGGCGAAGCCTAAGACCAACTGGCAATGTCTGAGAGACAGGCCTTCTGTATAC
TGGACCGAGCGATTTATCGAGGACACCACGTTGACCATCACGGTCCCTGTGGTGTCCCAGCGCATGGAGG
AGCTTTCGAGGCCCAAGCGGTTCTACCAGGAATATTACAACAATAACAGGACAACGCCCATCTGGTCCAT
CCCTCGGTCCACTCTGGAGTACCAAGCTTCTAACCGGCTGAAGCAACTGGCTACCCCGAAGGTTCGCAAT
AACATCTGGAGCATTAACATGTCTGAGGTTTCCCAAGTCTCCAGAGCAGCCCAGATGGCAGTCCCGACCC
CACGGACGCTTCGGCTGGCAAAGCCCAGGCCCCCAGCCACTCTGTTGGAAGAGTGGGACCCTATGCCAAA
ACCCAAGCCTTACGTGTCAGACTATAACCGCCTTCTTCAGCTGGCAACACCCAAGGCCCTGTCAGAAAAG
TGCGTTCCTGATCGCAGTCCTCAGTGGGAGGTCCTGGATGTCACCAAGAACGCGGTGGCCAGTTCACGGA
TCATCTCCCTGGCCCAGCCCAAAATTCGAAAGGACCTCAACGAGGGCTACAACCCATACTACATCTCCCC
AGCCTCTCTGGTGGCTCAGGCATCTCCTCGAATTTATGAGCTTGCCACCCCCAAATACATCACCAAGAAA
GTGTGA

Translation (351 aa):
MGELGEHRASLLSNPIPEVKTLGELKQGQNNGNLDLESEPFGSHWLQGSKATTGRTSEEPEEEIPPEEMA
GEELPETSNLDGPLQQDLEVEVVEMSHLSITERTPSVSTAKGRKKRSRRLLELAKPKTNWQCLRDRPSVY
WTERFIEDTTLTITVPVVSQRMEELSRPKRFYQEYYNNNRTTPIWSIPRSTLEYQASNRLKQLATPKVRN
NIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRPPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEK
CVPDRSPQWEVLDVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELATPKYITKK
V


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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