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Report for CCDS24085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24085.1 Public Mus musculus 10 Ric8b 23 108 98 CCDS HistoryNCBI Gene:237422Re-query CCDS DB by CCDS ID:24085.1Re-query CCDS DB by GeneID:237422See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24085.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038523.14 ENSMUSP00000046981.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038523.14Link to Ensembl Protein Viewer:ENSMUSP00000046981.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038523Re-query CCDS DB by Protein ID:ENSMUSP00000046981
Original member Current member NCBI NM_183172.2 NP_898995.1 Accepted alive Link to Nucleotide Sequence:NM_183172.2Link to Protein Sequence:NP_898995.1Re-query CCDS DB by Nucleotide ID:NM_183172Re-query CCDS DB by Protein ID:NP_898995Link to BLAST:NP_898995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898995.1 560 Q80XE1-1 560 100% 0 0

Chromosomal Locations for CCDS 24085.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84917742 84917825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84925546 84925593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84947412 84948020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84958016 84958110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84969863 84970091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84970729 84970824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84980048 84980192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84992120 84992264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85001782 85001901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85015076 85015187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGATGAAGAGCGCGCCCTCTACATCGTCCGGGCCGGCGAGGCGGGGGCTATCGAGCGGGTCCTGAGGG
ATTACAGCGACAAGCATAGGGCTACTTTCAAATTTGAATCAGCAGATGAAGATAAAAGAAAGAAACTCTG
TGAAGGCATATTTAAGGTCCTTGTCAAGGAGGTCCCAACGACATGCCAAGTGTCCTGCCTGGAAGTACTC
CGCATTCTCTCCAGAGACAAAAAGATCTTAGTTCCTGTAACAACTAAGGAAAATATGCAAATACTGCTGA
GACTAGCCAAGCTCCACGAGTCAGACGATTCTTTGGAGAAGGTGTCAGAGTTCCCAGTTATTGTGGAATC
ATTGAAGTGTCTGTGTAACATCGTGTTCAACAGTCAGATGGCACAGCAGCTTAGCCTGGAACTGAATCTC
GCTGCAAAGCTCTGTAACCTCCTAAGGAAGTGCAAGGACCGAAAATTTATCAATGACATAAAGTGCTTTG
ACTTGCGCTTGCTCTTCGTCTTGTCACTTTTGCACACTGACATCAGGTCACAATTGCGCTATGAGCTCCA
GGGACTCCCGCTGCTAACCCAGATCTTGGAAAGTGCCTTTAGCATCAAGTGGACCGATGAGTATGAGTCG
GCCATAGACCATAATGGACCTCCTCTCTCACCTCAGGAGACAGACTGTGCCATTGAGGCCCTCAAAGCTC
TGTTCAATGTGACGGTAGACAGTTGGAAGGTGCATAAAGAGAGCGATTCTCATCAGTTTCGTGTCATGGC
AGCTGTCCTTCGCCATTGTTTACTAATTGTAGGTCCAACTGAAGACAAAACCGAAGAGCTGCACAGTAAT
GCCGTCAACCTTTTAAGCAATGTTCCAGTCTCTTGTTTGGATGTTCTCATTTGTCCATTAACCCATGAAG
AAACAGCCCAAGAGGCAGCAACTCTAGATGAACTGCCCAGTGATAAAACAACGGAGAAAGACACAGCTTT
GAAAAACAGTACCATGGTATACAATGGCATGAATATGGAGGCCATTCACGTTTTACTCAATTTTATGGAG
AAGAGAATTGATAAGGGAAGCAGCTATAGAGAGGGTCTAACTCCAGTTCTCAGCTTATTAACAGAATGTT
CCCGAGCCCATCGGAACATCCGAAAATTTCTCAAAGATCAGGTTTTACCGCCTTTGAGAGATGTGACAAA
TCGACCAGAAGTCGGCTCAACCGTGAGAAATAAGCTGGTTCGTCTCATGACACATGTTGACCTCGGAGTC
AAGCAGATTGCTGCTGAGTTCCTTTTTGTCCTTTGCAAAGAGAGAGTGGATAGCCTGCTGAAATACACTG
GCTATGGGAACGCTGCAGGACTCTTGGCGGCCAGGGGCCTCTTGGCTGGAGGAAGAGGAGATAATTGGTA
CTCAGAGGACGAGGACACGGACACTGAAGAATACAAAAACGCAAAACCAAACATTAATCTTATCACTGGT
CATTTAGAGGAACCAATGCCAAACCCTATAGATGAAATGACAGAAGAACAAAAAGAATATGAAGCCATGA
AACTTGTCAACATGCTTGATAAACTTTCCAGAGAGGAGTTGCTTAAACCAATGGGACTAAAACCTGACGG
GACAATAACGCCTTTGGAGGAAGCACTCAGCCAGTATTCTGTCATCGAAGAGACCAGCTCGGACACAGAC
TGA

Translation (560 aa):
MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESADEDKRKKLCEGIFKVLVKEVPTTCQVSCLEVL
RILSRDKKILVPVTTKENMQILLRLAKLHESDDSLEKVSEFPVIVESLKCLCNIVFNSQMAQQLSLELNL
AAKLCNLLRKCKDRKFINDIKCFDLRLLFVLSLLHTDIRSQLRYELQGLPLLTQILESAFSIKWTDEYES
AIDHNGPPLSPQETDCAIEALKALFNVTVDSWKVHKESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSN
AVNLLSNVPVSCLDVLICPLTHEETAQEAATLDELPSDKTTEKDTALKNSTMVYNGMNMEAIHVLLNFME
KRIDKGSSYREGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGV
KQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKNAKPNINLITG
HLEEPMPNPIDEMTEEQKEYEAMKLVNMLDKLSREELLKPMGLKPDGTITPLEEALSQYSVIEETSSDTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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