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Report for CCDS24134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24134.1 Public Mus musculus 10 Tmcc3 23 108 98 CCDS HistoryNCBI Gene:319880Re-query CCDS DB by CCDS ID:24134.1Re-query CCDS DB by GeneID:319880See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065060.11 ENSMUSP00000063264.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065060.11Link to Ensembl Protein Viewer:ENSMUSP00000063264.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065060Re-query CCDS DB by Protein ID:ENSMUSP00000063264
Original member Current member NCBI NM_172051.3 NP_742048.2 Accepted alive Link to Nucleotide Sequence:NM_172051.3Link to Protein Sequence:NP_742048.2Re-query CCDS DB by Nucleotide ID:NM_172051Re-query CCDS DB by Protein ID:NP_742048Link to BLAST:NP_742048.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742048.2 477 Q8R310-1 477 100% 0 0

Chromosomal Locations for CCDS 24134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 94515027 94515104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94578423 94579339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94582274 94582409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94586728 94587030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGCCGGGCAGCGACACGGCGCTCACCGTGGACCGGACCTACTCAGACCCCGGCCGGCACCACCGCTGCA
AGAGCCGGGTGGACCGCCATGACATGAATACCCTCAGCCTACCCCTGAACATACGCCGAGGGGGATCAGA
CACCAACCTCAACTTCGATGTCCCCGATGGCATCCTGGATTTCCACAAGGTCAAACTCAATGCGGACAGC
CTGAGACAAAAAATCTTAAAGGTGACGGAGCAGATAAAGATCGAGCAGACGTCCCGAGATGGGAACGTTG
CAGAGTATCTGAAACTGGTCAGCAGTGCAGACAAGCAGCAGGCTGGACGCATCAAGCAGGTCTTTGAGAA
GAAAAACCAGAAGTCAGCCCACTCCATCGCCCAACTTCAGAAGAAGTTGGAGCAGTATCACAGAAAGCTC
AGGGAGATCGAACAGAATGGCGTGACCAGGAGCTCAAAGGACATCTCTAAAGACAGCCTGAAGGAAATAC
ACCACTCTCTGAAGGATGCCCACGTGAAATCTCGAACTGCTCCCCACTGCCTGGAGAGCAGTAAATCTAG
CATGCCAGGGGTATCCCTCACGCCCCCCGTGTTTGTCTTCAATAAGTCCAGAGAGTTTGCCAACTTGATC
CGGAATAAGTTTGGCAGTGCAGATAACATTGCTCACTTGAAGAATTCCCTGGAAGAGTTCAGGCCCGAAG
CCAGCCCCAGGGCTTACGGCGGAAGCGCTACCATCGTGAACAAACCTAAGTACGGCAGCGATGACGAATG
TTCTAGTGGCACATCCGGCTCAGCGGACAGCAATGGGAACCAGTCCTTTGGGGCTGGTGGGACCAGCACC
CTGGACAGCCAGGGGAAGATTGCCAAGATCATGGAGGAACTGAGGGAGATCAAGGTTACCCAAACCCAGC
TGGCGGAAGACATCGAGGCACTGAAGGTGCAGTTTAAGAGAGAATATGGCTTTATCTCTCAGACTCTGCA
AGAGGAGAGATACAGGTATGAGCGACTTGAAGACCAGCTCCATGACCTGACAGAGCTGCACCAGCATGAG
ACAGCCAATCTGAAGCAGGAATTGGCCAGCGCTGAGGAGAAGGTGGCCTACCAGGCCTATGAGCGCTCAA
GGGACATCCAGGAAGCCTTGGAATCTTGCCAGACCCGCATCTCTAAGCTCGAGCTGCATCAGCAGGAACA
GCAGACCCTGCAGACGGATGCCGTGAACGCCAAGGTCCTGCTGGGGAAGTGCATCAACGTGGTTCTGGCC
TTCATGACGGTCATCCTGGTGTGTGTGTCCACCCTGGCCAAGTTTGTCTCGCCCATGATGAAGAGCCGCT
CCCACATCCTTGGCACCTTCTTTGCTGTGACTCTTCTCGCCATATTCTGTAAAAACTGGGACCATATCTT
GTGTGCCATAGAAAGGATAATCATCCCGAGATGA

Translation (477 aa):
MPGSDTALTVDRTYSDPGRHHRCKSRVDRHDMNTLSLPLNIRRGGSDTNLNFDVPDGILDFHKVKLNADS
LRQKILKVTEQIKIEQTSRDGNVAEYLKLVSSADKQQAGRIKQVFEKKNQKSAHSIAQLQKKLEQYHRKL
REIEQNGVTRSSKDISKDSLKEIHHSLKDAHVKSRTAPHCLESSKSSMPGVSLTPPVFVFNKSREFANLI
RNKFGSADNIAHLKNSLEEFRPEASPRAYGGSATIVNKPKYGSDDECSSGTSGSADSNGNQSFGAGGTST
LDSQGKIAKIMEELREIKVTQTQLAEDIEALKVQFKREYGFISQTLQEERYRYERLEDQLHDLTELHQHE
TANLKQELASAEEKVAYQAYERSRDIQEALESCQTRISKLELHQQEQQTLQTDAVNAKVLLGKCINVVLA
FMTVILVCVSTLAKFVSPMMKSRSHILGTFFAVTLLAIFCKNWDHILCAIERIIIPR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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