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Report for CCDS24137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24137.1 Public Mus musculus 10 Mrpl42 23 108 98 CCDS HistoryNCBI Gene:67270Re-query CCDS DB by CCDS ID:24137.1Re-query CCDS DB by GeneID:67270See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075829.2 ENSMUSP00000075226.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075829.2Link to Ensembl Protein Viewer:ENSMUSP00000075226.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000075829Re-query CCDS DB by Protein ID:ENSMUSP00000075226
Original member Current member EBI ENSMUST00000218893.1 ENSMUSP00000151636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218893.1Link to Ensembl Protein Viewer:ENSMUSP00000151636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218893Re-query CCDS DB by Protein ID:ENSMUSP00000151636
Original member Current member NCBI NM_001359476.1 NP_001346405.1 Accepted alive Link to Nucleotide Sequence:NM_001359476.1Link to Protein Sequence:NP_001346405.1Re-query CCDS DB by Nucleotide ID:NM_001359476Re-query CCDS DB by Protein ID:NP_001346405Link to BLAST:NP_001346405.1
Original member Current member NCBI NM_026065.4 NP_080341.1 Accepted alive Link to Nucleotide Sequence:NM_026065.4Link to Protein Sequence:NP_080341.1Re-query CCDS DB by Nucleotide ID:NM_026065Re-query CCDS DB by Protein ID:NP_080341Link to BLAST:NP_080341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346405.1 142 Q9CPV3 142 100% 0 0
NP_080341.1 142 Q9CPV3 142 100% 0 0

Chromosomal Locations for CCDS 24137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 95480932 95480977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95490246 95490412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95493631 95493715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95496824 95496887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95500383 95500449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCTGCGGCAGTAAAATGGGCGATATCAAACAGAACTATCTGGAAGCATTTACTTCCAATCCAAAACG
GAGCTTTGTCTAGTGCTTGTCACAAATCCACATACTCTTCTCTTCCGGATGACTACAATTGCCAGGTGGA
CCTCGCCTTGACAGCCGACGGCAGGACAATAGTGTGCTACCACCCTTCTGTGGACATCCCCTACGAACAC
ACCAAACCCATCCCTCAACCAGATCTTCTGCATAATAATGAGGAAACCCACGAGCAGATCCTGAAAGCCA
AGTTAGAAGTTAGAAAGAGCAAGCAGCTGGAGCAAGGGCCCATGATAGAACAACTGAGCAAGGTGTTCTA
CACCACGAAGCATCGCTGGTACCCGCACGGACAGTATCACAATCGTCGTAAGAAACTGAATCCTCCCAGA
GACAGATGA

Translation (142 aa):
MAAAVKWAISNRTIWKHLLPIQNGALSSACHKSTYSSLPDDYNCQVDLALTADGRTIVCYHPSVDIPYEH
TKPIPQPDLLHNNEETHEQILKAKLEVRKSKQLEQGPMIEQLSKVFYTTKHRWYPHGQYHNRRKKLNPPR
DR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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