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Report for CCDS24145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24145.1 Public Mus musculus 10 Atp2b1 23 108 98 CCDS HistoryNCBI Gene:67972Re-query CCDS DB by CCDS ID:24145.1Re-query CCDS DB by GeneID:67972See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020107.7 ENSMUSP00000020107.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020107.7Link to Ensembl Protein Viewer:ENSMUSP00000020107.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020107Re-query CCDS DB by Protein ID:ENSMUSP00000020107
Original member Current member NCBI NM_026482.2 NP_080758.1 Accepted alive Link to Nucleotide Sequence:NM_026482.2Link to Protein Sequence:NP_080758.1Re-query CCDS DB by Nucleotide ID:NM_026482Re-query CCDS DB by Protein ID:NP_080758Link to BLAST:NP_080758.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080758.1 1220 G5E829 1220 100% 0 0

Chromosomal Locations for CCDS 24145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 98968917 98969124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98979704 98979901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98986891 98987145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98987241 98987366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98991062 98991202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98993867 98993905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98994646 98994807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98996768 98996982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98999739 98999981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99001288 99001529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99003141 99003378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99009404 99009583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99010202 99010289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99010674 99010780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99014459 99014650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99014884 99015097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99015484 99015695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99016923 99017030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99018715 99018897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99022808 99023119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3663 nt):
ATGGGCGACATGGCCAACAACTCAGTTGCGTATAGCGGTGTGAAGAACTCTTTGAAAGAAGCTAACCATG
ATGGAGACTTTGGAATTACGCTTACAGAGCTGCGAGCTCTCATGGAGCTCAGATCCACGGATGCATTACG
GAAAATACAGGAGAGCTATGGAGATGTCTATGGCATTTGCACCAAGTTGAAAACATCTCCCAATGAAGGT
TTAAGTGGAAATCCTGCAGATTTAGAAAGAAGAGAAGCAGTGTTTGGAAAGAACTTTATACCTCCTAAGA
AGCCAAAAACCTTTCTTCAGTTAGTCTGGGAAGCATTACAAGATGTCACTTTAATTATACTAGAAATTGC
AGCCATAGTATCATTGGGCCTTTCTTTTTATCAACCTCCGGAAGGGGATAATGCACTTTGTGGAGAAGTT
TCTGTTGGGGAAGAAGAAGGTGAAGGAGAAACGGGGTGGATTGAAGGAGCTGCGATCCTCTTGTCGGTGG
TGTGTGTGGTGTTGGTGACGGCTTTCAACGACTGGAGCAAGGAGAAGCAGTTCCGAGGCCTGCAGAGTCG
AATTGAGCAGGAACAGAAGTTCACCGTCATCAGGGGTGGGCAGGTCATCCAGATACCTGTAGCTGACATT
ACTGTTGGAGACATTGCCCAAGTGAAGTACGGTGACCTTCTTCCAGCTGATGGCATACTGATTCAAGGCA
ATGACCTGAAGATTGATGAGAGCTCATTGACTGGTGAATCTGATCATGTTAAGAAGTCTCTAGATAAGGA
TCCCTTACTTCTTTCAGGTACTCATGTGATGGAAGGTTCTGGAAGAATGGTGGTCACTGCTGTAGGTGTG
AATTCTCAAACAGGAATCATCTTCACCTTACTTGGAGCTGGGGGTGAAGAAGAGGAAAAGAAAGATGAGA
AGAAGAAGGAAAAGAAAAATAAGAAACAAGATGGAGCTATTGAGAATCGCAACAAAGCAAAAGCCCAGGA
CGGCGCGGCCATGGAGATGCAACCTCTGAAGAGTGAAGAAGGAGGGGACGGTGATGAGAAAGACAAGAAG
AAAGCAAATCTGCCAAAAAAGGAAAAATCCGTGTTACAGGGGAAACTCACAAAGCTGGCTGTTCAGATTG
GCAAAGCAGGTCTGCTGATGTCTGCCATCACAGTTATCATCCTAGTGTTGTATTTTGTGATCGATACCTT
CTGGGTTCAGAAAAGACCATGGCTTGCAGAGTGCACACCGATCTACATCCAGTACTTCGTGAAGTTCTTC
ATTATTGGAGTCACAGTTCTAGTGGTCGCCGTGCCGGAAGGTCTTCCGCTGGCAGTCACCATCTCACTGG
CTTACTCAGTCAAGAAAATGATGAAGGATAATAACTTAGTGAGACATCTGGATGCTTGTGAGACCATGGG
GAATGCTACAGCTATCTGTTCAGATAAAACAGGAACCCTGACGATGAACAGGATGACGGTTGTTCAAGCT
TACATAAATGAAAAGCATTATAAAAAGGTTCCGGAACCAGAAGCCATCCCACCAAATATCCTGTCCTACC
TGGTAACGGGGATTTCTGTGAATTGTGCTTATACGTCAAAAATATTGCCACCGGAGAAAGAGGGTGGATT
ACCCCGCCATGTGGGTAACAAAACAGAGTGTGCCTTGTTGGGGTTTCTCTTGGATTTAAAACGGGATTAT
CAAGATGTTAGAAATGAAATACCAGAGGAAGCACTGTACAAAGTCTATACCTTCAATTCTGTTAGGAAGT
CCATGAGCACAGTCCTGAAAAACTCAGATGGAAGTTTCCGCATCTTTAGCAAGGGTGCCTCCGAGATCAT
TCTGAAAAAGTGTTTCAAAATCCTGAGTGCTAATGGCGAGGCAAAAGTATTCCGACCCAGAGACCGCGAT
GACATTGTGAAAACTGTGATCGAGCCCATGGCATCAGAAGGCCTGAGGACCATATGCCTAGCGTTCAGAG
ACTTCCCAGCGGGGGAGCCAGAACCAGAGTGGGATAATGAGAATGATGTCGTCACCGGCCTTACGTGTAT
CGCGGTTGTGGGGATTGAAGATCCTGTGAGGCCTGAGGTACCAGAGGCAATAAAGAAATGTCAGAGGGCT
GGAATTACTGTGCGCATGGTCACTGGTGATAATATTAACACTGCTCGGGCCATTGCTACCAAATGTGGTA
TTTTACACCCAGGGGAAGATTTCCTATGCTTAGAAGGTAAAGATTTTAACCGAAGAATACGAAATGAAAA
AGGAGAGATTGAACAAGAAAGGATAGACAAGATTTGGCCAAAGCTTCGAGTACTTGCAAGATCATCTCCC
ACTGACAAACATACACTGGTGAAAGGTATAATTGACAGCACAGTCTCAGAGCAACGACAGGTTGTAGCTG
TAACGGGTGATGGTACAAATGACGGGCCTGCACTGAAGAAAGCAGACGTTGGCTTTGCAATGGGCATTGC
TGGAACTGATGTGGCTAAAGAAGCGTCTGATATTATTCTCACAGATGACAACTTTACAAGCATTGTCAAA
GCAGTTATGTGGGGACGAAATGTCTATGACAGCATCTCAAAATTCCTTCAGTTCCAGCTTACTGTTAATG
TAGTAGCAGTGATTGTTGCTTTCACGGGCGCTTGTATTACTCAAGACTCGCCACTTAAGGCGGTGCAGAT
GCTCTGGGTAAACCTCATCATGGACACGCTGGCTTCCCTGGCTCTGGCTACGGAACCACCCACCGAGTCA
CTCCTGCTTCGGAAGCCTTATGGTAGAAATAAGCCTCTCATCTCACGCACGATGATGAAGAACATCTTGG
GCCATGCATTCTATCAGCTCGTAGTGGTCTTTACACTCTTATTTGCTGGAGAAAAGTTTTTTGATATCGA
CAGCGGGAGGAATGCGCCTCTGCACGCTCCCCCGTCAGAACATTACACCATCGTGTTCAATACCTTTGTG
CTGATGCAGCTCTTCAATGAAATAAACGCCCGGAAAATTCACGGGGAAAGAAATGTGTTTGAAGGAATCT
TCAATAACGCCATCTTCTGCACCATTGTCCTGGGCACCTTTGTGGTGCAGATAATAATTGTGCAGTTTGG
CGGGAAGCCTTTCAGCTGCTCAGAACTTTCAATAGAGCAATGGCTGTGGTCGATATTCCTGGGAATGGGG
ACCTTACTCTGGGGCCAGCTTATTTCAACCATTCCAACCAGCCGCTTAAAGTTTCTAAAAGAAGCTGGTC
ATGGAACCCAGAAGGAGGAGATACCTGAGGAGGAATTAGCAGAGGATGTTGAAGAGATTGACCATGCCGA
AAGGGAGTTGCGGCGTGGCCAGATCTTGTGGTTTAGAGGCCTGAACAGAATCCAAACACAGATCCGAGTG
GTGAATGCATTTCGTAGTTCTTTATACGAAGGGTTAGAGAAGCCAGAATCAAGAAGTTCAATCCACAACT
TTATGACACACCCTGAGTTTAGGATAGAAGATTCAGAGCCGCACATCCCCCTTATTGATGACACTGATGC
TGAAGACGACGCCCCAACAAAACGCAACTCCAGCCCTCCGCCCTCTCCTAACAAAAATAACAATGCTGTT
GACAGCGGAATTCACCTTACAATAGAAATGAACAAGTCTGCTACCTCTTCATCCCCAGGAAGCCCACTAC
ATAGTTTGGAAACATCACTCTGA

Translation (1220 aa):
MGDMANNSVAYSGVKNSLKEANHDGDFGITLTELRALMELRSTDALRKIQESYGDVYGICTKLKTSPNEG
LSGNPADLERREAVFGKNFIPPKKPKTFLQLVWEALQDVTLIILEIAAIVSLGLSFYQPPEGDNALCGEV
SVGEEEGEGETGWIEGAAILLSVVCVVLVTAFNDWSKEKQFRGLQSRIEQEQKFTVIRGGQVIQIPVADI
TVGDIAQVKYGDLLPADGILIQGNDLKIDESSLTGESDHVKKSLDKDPLLLSGTHVMEGSGRMVVTAVGV
NSQTGIIFTLLGAGGEEEEKKDEKKKEKKNKKQDGAIENRNKAKAQDGAAMEMQPLKSEEGGDGDEKDKK
KANLPKKEKSVLQGKLTKLAVQIGKAGLLMSAITVIILVLYFVIDTFWVQKRPWLAECTPIYIQYFVKFF
IIGVTVLVVAVPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQA
YINEKHYKKVPEPEAIPPNILSYLVTGISVNCAYTSKILPPEKEGGLPRHVGNKTECALLGFLLDLKRDY
QDVRNEIPEEALYKVYTFNSVRKSMSTVLKNSDGSFRIFSKGASEIILKKCFKILSANGEAKVFRPRDRD
DIVKTVIEPMASEGLRTICLAFRDFPAGEPEPEWDNENDVVTGLTCIAVVGIEDPVRPEVPEAIKKCQRA
GITVRMVTGDNINTARAIATKCGILHPGEDFLCLEGKDFNRRIRNEKGEIEQERIDKIWPKLRVLARSSP
TDKHTLVKGIIDSTVSEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVK
AVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTLASLALATEPPTES
LLLRKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLFAGEKFFDIDSGRNAPLHAPPSEHYTIVFNTFV
LMQLFNEINARKIHGERNVFEGIFNNAIFCTIVLGTFVVQIIIVQFGGKPFSCSELSIEQWLWSIFLGMG
TLLWGQLISTIPTSRLKFLKEAGHGTQKEEIPEEELAEDVEEIDHAERELRRGQILWFRGLNRIQTQIRV
VNAFRSSLYEGLEKPESRSSIHNFMTHPEFRIEDSEPHIPLIDDTDAEDDAPTKRNSSPPPSPNKNNNAV
DSGIHLTIEMNKSATSSSPGSPLHSLETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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