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Report for CCDS24179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24179.1 Public Mus musculus 10 Thap2 23 108 98 CCDS HistoryNCBI Gene:66816Re-query CCDS DB by CCDS ID:24179.1Re-query CCDS DB by GeneID:66816See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218842.1 ENSMUSP00000151353.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218842.1Link to Ensembl Protein Viewer:ENSMUSP00000151353.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218842Re-query CCDS DB by Protein ID:ENSMUSP00000151353
Original member Current member NCBI NM_025780.4 NP_080056.1 Accepted alive Link to Nucleotide Sequence:NM_025780.4Link to Protein Sequence:NP_080056.1Re-query CCDS DB by Nucleotide ID:NM_025780Re-query CCDS DB by Protein ID:NP_080056Link to BLAST:NP_080056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080056.1 217 Q9D305 217 100% 0 0

Chromosomal Locations for CCDS 24179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 115372560 115372946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115376352 115376547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115384205 115384275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGCCGACCAATTGCGCCGCGGCGGGCTGTGCTGCTACCTACAACAAGCACATTAACATCAGCTTCCACA
GGTTTCCTTTGGATCCTAAAAGAAGAAAAGAATGGGTTCGCCTGGTTAGGCGCAAAAATTTTGTGCCAGG
AAAACACACTTTTCTTTGCTCAAAGCACTTTGAAGCCTCCTGTTTTGATCTAACAGGACAAACCCGACGA
CTTAAAATGGATGCTGTTCCAACCATTTTTGATTTTTGTACCCATATAAAGTCTCTGAAACTCAAGTCAA
GGAATCTTCTGAAGACAAACAACAGTTTTCCTCCAACTGGACCATGTAATTTAAAGCTGAACGGCAGTCA
GCAAGTACTGCTTGAACACAGTTATGCCTTTAGGAACCCTATGGAGGCGAAAAAAAGGATAATTAAACTA
GAAAAGGAAATAGCAAGCTTGAGAAAAAAAATGAAAACTTGCCTGCAAAGAGAACGCAGAGCAACTCGAA
GGTGGATCAAAGCCACGTGCTTTGTGAAGAGCTTAGAAGCAAGTAACATGCTACCTAAGGGCATCTCAGA
ACAGATTTTACCAACTGCCTTAAGCAATCTTCCTCTGGAAGATTTAAAAAGTCTTGAACAAGATCAACAA
GATAAAACAGTACCCATTCTCTAA

Translation (217 aa):
MPTNCAAAGCAATYNKHINISFHRFPLDPKRRKEWVRLVRRKNFVPGKHTFLCSKHFEASCFDLTGQTRR
LKMDAVPTIFDFCTHIKSLKLKSRNLLKTNNSFPPTGPCNLKLNGSQQVLLEHSYAFRNPMEAKKRIIKL
EKEIASLRKKMKTCLQRERRATRRWIKATCFVKSLEASNMLPKGISEQILPTALSNLPLEDLKSLEQDQQ
DKTVPIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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