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Report for CCDS24300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24300.1 Public Mus musculus 10 Itga7 23 108 98 CCDS HistoryNCBI Gene:16404Re-query CCDS DB by CCDS ID:24300.1Re-query CCDS DB by GeneID:16404See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099112.3 ENSMUSP00000096712.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099112.3Link to Ensembl Protein Viewer:ENSMUSP00000096712.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099112Re-query CCDS DB by Protein ID:ENSMUSP00000096712
Original member NCBI NM_008398.2 NP_032424.2 Updated not alive Link to Nucleotide Sequence:NM_008398.2Link to Protein Sequence:NP_032424.2Re-query CCDS DB by Nucleotide ID:NM_008398Re-query CCDS DB by Protein ID:NP_032424
Current member NCBI NM_008398.3 NP_032424.2 Accepted alive Link to Nucleotide Sequence:NM_008398.3Link to Protein Sequence:NP_032424.2Re-query CCDS DB by Nucleotide ID:NM_008398Re-query CCDS DB by Protein ID:NP_032424Link to BLAST:NP_032424.2

Chromosomal Locations for CCDS 24300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128933989 128934194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128939040 128939167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128939268 128939347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128940682 128940937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128941822 128941941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128942808 128943015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128943118 128943311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128943553 128943641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128943751 128943878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128944005 128944100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128944241 128944302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128944404 128944573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128945405 128945554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128946287 128946402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128946799 128946991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128948817 128948897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128948983 128949062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128949161 128949235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128949374 128949476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128949963 128950139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128950304 128950432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128953443 128953556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128953760 128953858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128953946 128954071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128957621 128957851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3411 nt):
ATGGCCAGGATTCCGAGGTGCGATTTTCTCCGGCCCCCCGGAATCTACTATCTTATTACTTCCTTGCTCG
CTGGACTGTTCTTACCACCGGCTATCGCCTTCAATCTGGATGTGATGGGTGCCATACGCAAGGAGGGAGA
ACCCGGCAGCCTATTCGGCTTTTCGGTGGCCCTGCACCGACAATTACAGCCCCGACCCCAGAGCTGGCTG
CTGGTGGGCGCTCCCCAGGCCCTGGCTCTTCCTGGACAGCAGGCAAACCGCACCGGAGGCCTCTTTGCTT
GTCCCCTGAGCCTAGAGGAGACAGATTGCTACAGAGTGGACATTGACAGGGGAGCTAACGTGCAGAAGGA
GAGCAAGGAGAACCAATGGCTGGGAGTCAGTGTCCGGAGCCAGGGGCCAGGGGGCAAGATTGTTACGTGT
GCACACCGATATGAGTCTCGACAGAGAGTGGACCAGGCTTTGGAGACTCGGGATGTGATTGGCCGCTGCT
TTGTGCTAAGCCAGGACCTGGCCATCCGTGATGAGCTGGATGGTGGGGAGTGGAAGTTCTGTGAGGGGCG
CCCCCAGGGCCATGAACAGTTTGGGTTCTGTCAGCAGGGCACAGCTGCCACCTTCTCCCCTGACAGTCAC
TACCTCGTCTTTGGGGCTCCAGGAACCTATAACTGGAAGGGGTTGCTTTTTGTGACCAACATTGATAGCT
CAGACCCTGACCAGCTGGTGTATAAAACTTTGGACCCTGCTGACCGGCTCACAGGACCAGCCGGAGACTT
GACCTTGAATAGCTATTTAGGTTTCTCCATCGATTCTGGGAAGGGTCTTATGCGCTCAGAAGAGCTGAGT
TTTGTGGCAGGGGCCCCACGTGCCAACCACAAAGGGGCTGTGGTCATTCTGCGCAAGGATAGCGCCAGCC
GCTTGATACCTGAGGTTGTGCTGTCTGGGGAGCGCCTGACCTCTGGCTTTGGCTACTCACTGGCTGTGAC
TGATCTCAACAATGATGGCTGGGCAGACCTGATTGTGGGTGCCCCCTACTTCTTTGAACGCCAAGAAGAG
CTGGGAGGTGCTGTGTATGTGTACATGAACCAGGGTGGCCATTGGGCAGATATCTCTCCTCTCCGAATCT
GTGGCTCCCCTGATTCCATGTTTGGGATCAGTTTGGCTGTATTGGGGGACCTCAACCAAGATGGCTTCCC
AGACATTGCCGTGGGAGCTCCCTTTGACGGAGATGGGAAGGTCTTTATCTACCATGGGAGCAGCCTTGGG
GTGGTTGTCAAACCTTCACAGGTGCTGGAGGGCGAGGCGGTGGGTATCAAGAGCTTTGGTTACTCCCTGT
CTGGTGGCCTGGATGTGGATGGAAATCACTACCCAGACCTGCTTGTGGGCTCCCTGGCTGATACCGCTGC
TCTGTTCAGGGCCAGACCTGTTCTACATGTCTCCCAAGAGATCTTCATTGACCCCAGAGCCATCGATCTG
GAACAACCCAACTGTGCCGATGGACGCTTGGTCTGTGTGGACATAAAGATCTGTTTCAGCTATGTCGCTG
TGCCCAGCAGCTACAGCCCTAGTGTGGCCTTAGATTATATGTTAGATGGGGACACAGACCGGAGGCTCCG
GGGCCAGGTTCCACGTGTGACGTTTCTGAGCCGAGGCCTGGATGACCTCAGGCATCAGTCCTCCGGCACC
GTGTGGCTGAAGCACCAACATGACCGAGTCTGTGGAGATACTGTGTTCCAGCTGCAGGAAAACGTCAAAG
ACAAGCTACGGGCCATTGTGGTGACCCTGTCATATGGTCTCCGAACCCCTCCATTAGGGAGGCAAGCACC
TGGCCAGGAGCTCCCCACTGTGGCTCCCATCCTCAATGCTCACCAGCCCAGCACCCAGAGGACTGAGATC
CACTTTCTGAAGCAAGGCTGCGGTGAAGATAAGATCTGTCAGAGCAACCTCCAGCTCGAGCGGTACCAGT
TCTGTTCCAGGATCAGCGACACAGAGTTCCAGGCTCTGCCCATGGATCTGGATGGAAGGACCGCCCTGTT
CGCATTGAGTGGGCAGCCGTTCATAGGCCTGGAACTGACAGTCACCAACCTGCCCTCTGACCCTGCCCGG
CCTCAGGCAGATGGGGATGATGCTCATGAAGCACAGCTCTTGGTCACTCTCCCAGCCTCTCTACGGTACT
CAGGAGTCCGTGCTCTGGACTCTGTGGAGAAGCCGCTCTGCCTGTCCAATGACAGCGCCTCTCATGTCGA
GTGTGAGCTGGGGAACCCTATGAAGAGAGGCGCTCAGGTCACTTTTTACCTCATCCTCAGCACCTCTGGG
ATCACTATTGAGACCACAGAGCTGGAGGTGAAATTGCTGTTAGCCACGATCAGTGAGCAGGAGCTGGATC
CGGTCTCCGTTCGGGCTCATGTCTTCATTGAATTGCCACTGTCCATTTCAGGGGTGGCCACTCCCCAGCA
ACTCTTCTTCTCTGGCGAGGTGAAGGGCGAAAGTGCCATGCGATCTGAGAGGGACGTGGGCAGCAAAGTC
AAGTATGAGGTCACGGTCTCCAATCAAGGCCAGTCTCTCAATACTCTGGGCTCTGCGTTCCTCAACATCA
TGTGGCCCCACGAGATCGCCAATGGAAAGTGGCTGCTGTACCCCATGCGGGTAGAGCTGGAGGGCGGACA
GGGGCCTGGCAAGAGAGGGATCTGTTCCCCAAGACCCAACATCCTCCAGCTGGATGTGGACAGCAGGGAT
AGGAGGCGGCGAGAGCTGGGGCAGCCGGAGCCGCAGGAGCCTCCAGAGAAGGTGGAGCCTAGCACATCCT
GGTGGCCAGTGTCCTCTGCTGAGAAGAGAAACGTGACTCTGGACTGCGCCCAGGGCACGGCCAAGTGTGT
GGTGTTCAGCTGCCCACTCTACAGCTTTGATCGTGCAGCCGTGCTTCACGTCTGGGGCCGCCTCTGGAAC
AGCACCTTTCTGGAGGAGTACATGGCCGTGAAATCCCTGGAAGTGATCGTCCGAGCCAACATCACAGTGA
AATCCTCCATTAAGAACTTGTTGCTCAGAGATGCATCCACAGTGATTCCAGTGATGGTGTACTTGGACCC
CATGGCCGTGGTTGTGGAAGGAGTCCCCTGGTGGGTCATCCTCCTGGCAGTGCTGGCTGGGCTGTTAGTC
CTGGCCTTGCTGGTACTGCTGCTGTGGAAGCTGGGATTCTTCAAGCGGGCGAAGCACCCCGAGGCCACCG
TGCCCCAGTACCACGCAGTGAAGATCCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACAGGCAC
CATCCAGAGGAGTAACTGGGGCAACTCCCAGTGGGAGGGCTCCGACGCACACCCCATCTTGGCTGCCGAC
TGGCATCCTGAGCTGGGTCCTGATGGACATCCGGTGCCAGCCACTGCCTAA

Translation (1136 aa):
MARIPRCDFLRPPGIYYLITSLLAGLFLPPAIAFNLDVMGAIRKEGEPGSLFGFSVALHRQLQPRPQSWL
LVGAPQALALPGQQANRTGGLFACPLSLEETDCYRVDIDRGANVQKESKENQWLGVSVRSQGPGGKIVTC
AHRYESRQRVDQALETRDVIGRCFVLSQDLAIRDELDGGEWKFCEGRPQGHEQFGFCQQGTAATFSPDSH
YLVFGAPGTYNWKGLLFVTNIDSSDPDQLVYKTLDPADRLTGPAGDLTLNSYLGFSIDSGKGLMRSEELS
FVAGAPRANHKGAVVILRKDSASRLIPEVVLSGERLTSGFGYSLAVTDLNNDGWADLIVGAPYFFERQEE
LGGAVYVYMNQGGHWADISPLRICGSPDSMFGISLAVLGDLNQDGFPDIAVGAPFDGDGKVFIYHGSSLG
VVVKPSQVLEGEAVGIKSFGYSLSGGLDVDGNHYPDLLVGSLADTAALFRARPVLHVSQEIFIDPRAIDL
EQPNCADGRLVCVDIKICFSYVAVPSSYSPSVALDYMLDGDTDRRLRGQVPRVTFLSRGLDDLRHQSSGT
VWLKHQHDRVCGDTVFQLQENVKDKLRAIVVTLSYGLRTPPLGRQAPGQELPTVAPILNAHQPSTQRTEI
HFLKQGCGEDKICQSNLQLERYQFCSRISDTEFQALPMDLDGRTALFALSGQPFIGLELTVTNLPSDPAR
PQADGDDAHEAQLLVTLPASLRYSGVRALDSVEKPLCLSNDSASHVECELGNPMKRGAQVTFYLILSTSG
ITIETTELEVKLLLATISEQELDPVSVRAHVFIELPLSISGVATPQQLFFSGEVKGESAMRSERDVGSKV
KYEVTVSNQGQSLNTLGSAFLNIMWPHEIANGKWLLYPMRVELEGGQGPGKRGICSPRPNILQLDVDSRD
RRRRELGQPEPQEPPEKVEPSTSWWPVSSAEKRNVTLDCAQGTAKCVVFSCPLYSFDRAAVLHVWGRLWN
STFLEEYMAVKSLEVIVRANITVKSSIKNLLLRDASTVIPVMVYLDPMAVVVEGVPWWVILLAVLAGLLV
LALLVLLLWKLGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTIQRSNWGNSQWEGSDAHPILAAD
WHPELGPDGHPVPATA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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