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Report for CCDS24463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24463.1 Public Mus musculus 11 Vps54 23 108 98 CCDS HistoryNCBI Gene:245944Re-query CCDS DB by CCDS ID:24463.1Re-query CCDS DB by GeneID:245944See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006221.13 ENSMUSP00000006221.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006221.13Link to Ensembl Protein Viewer:ENSMUSP00000006221.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006221Re-query CCDS DB by Protein ID:ENSMUSP00000006221
Original member Current member NCBI NM_139061.5 NP_620692.3 Accepted alive Link to Nucleotide Sequence:NM_139061.5Link to Protein Sequence:NP_620692.3Re-query CCDS DB by Nucleotide ID:NM_139061Re-query CCDS DB by Protein ID:NP_620692Link to BLAST:NP_620692.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620692.3 977 Q5SPW0-1 977 100% 0 0

Chromosomal Locations for CCDS 24463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 21263219 21263354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21264630 21264871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21268785 21268863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21271704 21271738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21274998 21275129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21277675 21278060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21291033 21291159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21292024 21292131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21295341 21295396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21298754 21298850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21299978 21300318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21305651 21305780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21306366 21306547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21306909 21307021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21308739 21308802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21311077 21311182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21312240 21312327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21312851 21312972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21313084 21313164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21314919 21315026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21316792 21316886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21319753 21319858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2934 nt):
ATGGCTTCAAGCCACAGTTCTTCTCCAGTGCCTCAAGGAAGCAGCAGTGATGTTTTCTTTAAAAAAGAGG
TAGATCCAACAAAACACATTCGACCTGTGCAGTCACTGCCAGATGTGTGTCCCAAGGAACCCACAGGTGA
TTCACATACTTTATGTGTTGCCCCATCTCTAGTTACAGATCAACATAGATGGACTGTGTATCATTCCAAA
GTAAATCTCCCAGCAGCATTAAATGATCCTACACTAGCAAAAAGAGAATCTGACTTCTTCACAAAAACTT
GGGGATTGGACTTTGTGGACACTGAAGTCATACCTTCACTCTACCTCCCACAGATCAGCAAGGAGAATTT
TATAGCATATCAGCAGGAGATCTCTCAGAGAGAGAAGATTCATGAGAGATGCAAGAATATTTGTCCTCCT
AAAGATACCTTTGACAGGACTCTTTTACATATTCATGATAAATCCAGGACAGATCTGGAGCAAGTACCTA
AGATTTTTATGAAACCAGATTTTGCCTTGGATGATTCTTTAACTTTTAATTCAGTTTTACCATGGTCTCA
TTTTAATACTGCTGGTGGGAAAGGAAGTCGCGACGCAGCTTCTTCCAAGTTGCTTCAGGAAAAGCTGAGC
CATTATCTGGATATTGTGGAAGTAAACATTGCTCACCAGATCTCTCTACGTTCAGAAGCATTTTTTCATG
CAATGACCTCTCAACACGAATTGCAGGACTACCTCAAGAAAACTACCCAGGCTGTAAAAATGCTTCGAGA
TAAAATTGCACAGATTGATAAAGTTATGTGTGAAGGATCACTACAGATTTTAAGACTGGCACTTACCAGA
AATAATTGTGTTAAAGTATACAATAAACTGAAGTTAATGGCCACTGTACACCAAACTCAGCCTACAGTGC
AGGTGTTGTTATCTACTTCTGAATTTGTTGGAGCGTTGGACTTAATAGCAACAACTCAAGAGGTTCTGCA
GCAGGAGCTTCAGGGCATTCACAGCTTCCGGCATTTGGGATCACAGCTTTGTGAATTAGAAAAGCTGATT
GATAAAATGATGATTGCAGAATTTTCTACTTATTCTCATAGTGACTTAAATAGACCACTGGAAGGTGAAT
GCCAAGTTTTAGAAGAGGAAAGATTAGTATCTCTTGTATTTGGGCTTTTGAAACAAAGAAAACTTAATTT
TTTAGAAATCTATGGTGAAGAAATGATTATTACAGCAAAGAACATCATTAAAGAGCGTGTGATTAATAAA
GTTTCACAAATAGAAGAAATAGACACAGACGTTGTTGTAAAGCTTGCAGATCAAATGAGAATGTTGAATT
TTCCCCAGTGGATTGATCTGTTAAAGGACATTTTCTCTAAGTTTACAGTTTTCCTACAGAGAGTTAAGGC
AACATTGAATATTATCCACAGTGTTGTTCTGTCAGTTCTTGAGAAAAGCCAAAGGACTAGAGAATTGGAA
GAGATCCCACAGCAGAGGAGCGCTGGGAAGGACAGCTCCTTGGACACAGACGTGGCTTACCTGACACACG
AGGGCTGGTTCATAAGTGATGCTTTCAGTGAGGGTGAGCCAGCATCTGCGGCGGTTGATACTACCTCTCA
AAGAAACACGTCTCCACATAGCGAGCCCTGCAGCAGTGATTCGGTATCAGAACCAGAATGTACTACTGAT
TCTTCATCCAGCAAGGAGCAGACATCAGCGTGTGCTCCTCCAGGAGGTATAGAGATTATAGTCAGTGAAG
ACATGAGGTTAACTGACTTGGAGCTAGGAAAACTAGCAAGTAACATCCAGGAGTTACTGTGTAATGCTTC
AGATGTATGCCATGATCGAGCTGTCAAATTTCTCATGTCAAGAGCAAAGGACGGTTTTCTTGAAAAATTG
AATTCCACGGAATTCATAGCACTCTCGAGATTAATGGAGACATTCATAGTGGACACTGAACAGATCTGTG
GGAGGAAGAGCACGTCACTGCTTGGGGCCCTTCAGAGCCAAGCAAATAAGTTTGTGAACAGGTTTCATGA
AGAGAGGCGGACCAAGCTCAGCCTCCTCTTAGACAACGAGCGTTGGAAGCAGGCTGATGTTCCTGCAGAA
TTTCAGGATCTTGTTGATTCTATAGCGGATGGAAAGATTGCTTTACCTGAAAAAAAGCCAGTGGTTACAG
AAGAAAGGAAGCCAGCTGATGTTCTTGTTGTTGAGGGACACCAGTATGCAGTTGTCGGAACCGTCTTGCT
GTTAATAAGAATCATTCTTGAATATTGCCAGTGTGTGGATAACATCCCCTCCGTCACTACTGACATGCTC
ACTCGCCTGACAGATCTGCTGAAGTACTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGCTGGTGCTT
TGCAAGTTGTTGGACTAAAAACAATTACTACAAAAAACTTGGCCCTCTCTTCACGGTGTCTGCAGTTGAT
TGTGCACTACATTCCCGTGATCCGGGCTCACTTTGAAGCCCGACTGCCCCCCAAGCAATGGAGCATGCTT
AGACATTTTGATCACATCACAAAGGATTACCATGATCATATAGCTGAAATTTCAGCTAAGCTTGTAGCGA
TAATGGATAGCCTATTTGATAAGCTGTTATCAAAGTATGAGGTGAAAGCTCCTGTTCCTTCCCCGTGTTT
CAGGAATATTTGTAAGCAAATGACAAAAATGCATGAAGCTATATTTGATCTTCTTCCCGAAGAACAAACA
CAGATGTTATTTTTAAGAATTAATGCAAGTTACAAACTCCACTTGAAAAAACAGTTATCACACTTAAATG
TAATAAATGACGGAGGACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTACACTGGAAATCTTCA
AGCCTTAAAAGGCCTTAAAGATCTGGATCTAAATATGGCCGAGATCTGGGAACAGAAGAGGTGA

Translation (977 aa):
MASSHSSSPVPQGSSSDVFFKKEVDPTKHIRPVQSLPDVCPKEPTGDSHTLCVAPSLVTDQHRWTVYHSK
VNLPAALNDPTLAKRESDFFTKTWGLDFVDTEVIPSLYLPQISKENFIAYQQEISQREKIHERCKNICPP
KDTFDRTLLHIHDKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAGGKGSRDAASSKLLQEKLS
HYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLKKTTQAVKMLRDKIAQIDKVMCEGSLQILRLALTR
NNCVKVYNKLKLMATVHQTQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLI
DKMMIAEFSTYSHSDLNRPLEGECQVLEEERLVSLVFGLLKQRKLNFLEIYGEEMIITAKNIIKERVINK
VSQIEEIDTDVVVKLADQMRMLNFPQWIDLLKDIFSKFTVFLQRVKATLNIIHSVVLSVLEKSQRTRELE
EIPQQRSAGKDSSLDTDVAYLTHEGWFISDAFSEGEPASAAVDTTSQRNTSPHSEPCSSDSVSEPECTTD
SSSSKEQTSACAPPGGIEIIVSEDMRLTDLELGKLASNIQELLCNASDVCHDRAVKFLMSRAKDGFLEKL
NSTEFIALSRLMETFIVDTEQICGRKSTSLLGALQSQANKFVNRFHEERRTKLSLLLDNERWKQADVPAE
FQDLVDSIADGKIALPEKKPVVTEERKPADVLVVEGHQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDML
TRLTDLLKYFNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQWSML
RHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPEEQT
QMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIWEQKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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