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Report for CCDS24650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24650.1 Public Mus musculus 11 Msantd5l 23 108 98 CCDS HistoryNCBI Gene:193286Re-query CCDS DB by CCDS ID:24650.1Re-query CCDS DB by GeneID:193286See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054226.2 ENSMUSP00000061848.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054226.2Link to Ensembl Protein Viewer:ENSMUSP00000061848.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000054226Re-query CCDS DB by Protein ID:ENSMUSP00000061848
Original member Current member EBI ENSMUST00000065950.9 ENSMUSP00000071085.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065950.9Link to Ensembl Protein Viewer:ENSMUSP00000071085.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000065950Re-query CCDS DB by Protein ID:ENSMUSP00000071085
Original member Current member NCBI NM_001358279.1 NP_001345208.1 Accepted alive Link to Nucleotide Sequence:NM_001358279.1Link to Protein Sequence:NP_001345208.1Re-query CCDS DB by Nucleotide ID:NM_001358279Re-query CCDS DB by Protein ID:NP_001345208Link to BLAST:NP_001345208.1
Original member Current member NCBI NM_001358280.1 NP_001345209.1 Accepted alive Link to Nucleotide Sequence:NM_001358280.1Link to Protein Sequence:NP_001345209.1Re-query CCDS DB by Nucleotide ID:NM_001358280Re-query CCDS DB by Protein ID:NP_001345209Link to BLAST:NP_001345209.1
Original member Current member NCBI NM_001358282.1 NP_001345211.1 Accepted alive Link to Nucleotide Sequence:NM_001358282.1Link to Protein Sequence:NP_001345211.1Re-query CCDS DB by Nucleotide ID:NM_001358282Re-query CCDS DB by Protein ID:NP_001345211Link to BLAST:NP_001345211.1
Original member Current member NCBI NM_177567.4 NP_808235.1 Accepted alive Link to Nucleotide Sequence:NM_177567.4Link to Protein Sequence:NP_808235.1Re-query CCDS DB by Nucleotide ID:NM_177567Re-query CCDS DB by Protein ID:NP_808235Link to BLAST:NP_808235.1

Chromosomal Locations for CCDS 24650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51253793 51254052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51254359 51254590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGGCCACCCGGGCAGGAAGATCCACAAGAAGACCAGGGCTCTTTGCAGGCGCCTTTACCAGCAGGGCC
TGAAGAAGAGCTGGGAAAGCTGTTTCGACCTACTGCTGAGCCTGCGAGATCTGCACAGGACTCTCTGTAA
TGAAAGACCAGGGATTGAACCCTTGTTTTCTCCTTATGCTGAGGCCCTGTACAGGATCCTGGGCTCCAGT
CCCCAGGGAAGCCATGTCCCAGGTCCTCTCGATGATGGGGCTGGTAACCCTCCACTTTCTGTGTACCCTC
AAACTCCCAGGAACCAGCCTTGGGATTATGGCGTCGCTGTTCCTTCTGCACAGCTTCAAGGGAACGCACT
GCCAATGATGTCACAGGAGGATTCCCTGTTTCCAAGAGGGGAGCACTGGAACCCCAACCATTCAATGTCA
GCTCCAAACTTACTTCCTGACTTTGCCCCAGGAGACCCTAGCTTCCAGCAACCGTGGCCCACCGCGGAAT
AA

Translation (163 aa):
MGHPGRKIHKKTRALCRRLYQQGLKKSWESCFDLLLSLRDLHRTLCNERPGIEPLFSPYAEALYRILGSS
PQGSHVPGPLDDGAGNPPLSVYPQTPRNQPWDYGVAVPSAQLQGNALPMMSQEDSLFPRGEHWNPNHSMS
APNLLPDFAPGDPSFQQPWPTAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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