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Report for CCDS24652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24652.1 Public Mus musculus 11 Col23a1 23 108 98 CCDS HistoryNCBI Gene:237759Re-query CCDS DB by CCDS ID:24652.1Re-query CCDS DB by GeneID:237759See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102765.8 ENSMUSP00000099826.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102765.8Link to Ensembl Protein Viewer:ENSMUSP00000099826.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000102765Re-query CCDS DB by Protein ID:ENSMUSP00000099826
Original member Current member NCBI NM_153393.2 NP_700442.2 Accepted alive Link to Nucleotide Sequence:NM_153393.2Link to Protein Sequence:NP_700442.2Re-query CCDS DB by Nucleotide ID:NM_153393Re-query CCDS DB by Protein ID:NP_700442Link to BLAST:NP_700442.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700442.2 532 Q8K4G2 532 100% 0 0

Chromosomal Locations for CCDS 24652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51290127 51290387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51316896 51316962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51517206 51517250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51525952 51525959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51527868 51527894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51549693 51549719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51551134 51551160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51551976 51552002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51557471 51557587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51558429 51558464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51560007 51560033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51561889 51561915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51563000 51563053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51564741 51564803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51565177 51565221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51567896 51567973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51569461 51569514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51570102 51570146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51571174 51571263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51572068 51572130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51572456 51572512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51572758 51572784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51574001 51574063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51574147 51574200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51574432 51574458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51576851 51576904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51577074 51577160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51579575 51579613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51580064 51580066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGGCGCGGGCGAGCGCGCGGCGGGCGGAGGAGGCGCGCAGGACCCCGGAGCGGGCTGCGGGTCGCGGG
CGCTGAGCGCGCTGTGCCTGCTGCTGTCGGTGGGCTCTGCGGCCGCCTGTCTCCTGTTGGGAGCCCAGGC
GGCCGCCCTGCATGGCCGAGTGGCGGCGCTGGAGCAGGAGCGCGAGCTGTTGCGGCATGCGGGGCCGTCC
GGAGCCCTGGCCGCCTGGGCCGAAACGCACCTGGAGCGCCTGTTACGGGAGAAGTTGGATGGAGTCGCCA
AGCTCAGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGTCCCCCTGGTCCCCCTGGACGGCGTGGCAA
GCCTGGACGAAGAGGCGACCCTGGTCCTCCAGGGCAATCAGGACGAGATGGCTACCCGGGACCTCTAGGT
CTGGACGGCAAGCCCGGACTTCCAGGCCCCAAAGGGGAAAAGGGTACACCGGGAGACTTTGGCCCGCGGG
GAGCCCAAGGGCAAGATGGAGTTGCAGGACCACCGGGGCCTCCTGGACCACCTGGGGCCCGGGGCCCTCC
TGGTGACACTGGGAAAGATGGCCCCCGAGGAGCGCAAGGCCCAGCGGGTCCCAGAGGAGAGCCCGGACAA
GATGGCGAGATGGGCCCCAAAGGACCTCCAGGACCCAAGGGAGAACCTGGCATTCCTGGGAAGAAGGGGG
ATGATGGGATGGCCAACCAGCCAGGACTCCCTGGACCCCCAGGGCCCAAGGGTGAGCCAGGGGATGTGGG
GCCCCGAGGAGAGAATGGAGTGGACGGCATTCCTGGACTAAAGGGGGAGCCCGGTCACCCAGGCGTGGAT
GGAGCCACAGGGCCCCGGGGTGCCCCGGGCCTCAAGGGAGAACAAGGTGACACAGTGGTAATCGACTATG
ACGGCAGGATCTTAGATGCCCTAAAGGGTCCCCCTGGACCACAGGGAGCTCCTGGGCCACCAGGGATCCC
TGGAGCCAAGGGTGAACTCGGATTGCCTGGTGCTCCAGGAATCGATGGAGAGAAGGGTCCCAAAGGACCA
AAAGGAGACCCGGGAGAGCCTGGACCAGCTGGGCCCAAAGGGGAAACAGGAGAGATGGGCCTGTCAGGTC
TTCCGGGTGCTGATGGTCCCAAGGGAGAAAAGGGAGAGTCGGCGTCTGACCATCTACAAGAGAGCCTGGC
CCAGATCATAGTGGAACCAGGGCCCCCTGGTCCTCCTGGTCCCCCTGGCCCCATGGGCCTTCAGGGGATC
CAAGGTCCCAAGGGCCTGGATGGAGCCAAGGGAGAAAAGGGTACATCGGGTGAGAGAGGCCCTCACGGCC
TGCCTGGACCAGTTGGCCCACCAGGCCTTATTGGGTTGCCAGGAACCAAAGGAGAGAAGGGCAGACCTGG
AGAACCAGGACTCGATGGGTTCCCTGGACCCAGGGGAGAGAAGGGTGACCGAAGTGAACGTGGAGAGAAG
GGGGAGCGAGGAGTTCCTGGCCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGGCCCACCAGGCCTTG
ACCAGCCATGTCCTGTGGGCCCCGATGGGTTGCCTGTGCCTGGTTGCTGGCATAAGTGA

Translation (532 aa):
MGAGERAAGGGGAQDPGAGCGSRALSALCLLLSVGSAAACLLLGAQAAALHGRVAALEQERELLRHAGPS
GALAAWAETHLERLLREKLDGVAKLRTVREAPSECICPPGPPGRRGKPGRRGDPGPPGQSGRDGYPGPLG
LDGKPGLPGPKGEKGTPGDFGPRGAQGQDGVAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPRGEPGQ
DGEMGPKGPPGPKGEPGIPGKKGDDGMANQPGLPGPPGPKGEPGDVGPRGENGVDGIPGLKGEPGHPGVD
GATGPRGAPGLKGEQGDTVVIDYDGRILDALKGPPGPQGAPGPPGIPGAKGELGLPGAPGIDGEKGPKGP
KGDPGEPGPAGPKGETGEMGLSGLPGADGPKGEKGESASDHLQESLAQIIVEPGPPGPPGPPGPMGLQGI
QGPKGLDGAKGEKGTSGERGPHGLPGPVGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEK
GERGVPGRKGVKGQKGEPGPPGLDQPCPVGPDGLPVPGCWHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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