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Report for CCDS24657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24657.1 Public Mus musculus 11 N4bp3 23 108 98 CCDS HistoryNCBI Gene:212706Re-query CCDS DB by CCDS ID:24657.1Re-query CCDS DB by GeneID:212706See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001080.15 ENSMUSP00000001080.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001080.15Link to Ensembl Protein Viewer:ENSMUSP00000001080.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000001080Re-query CCDS DB by Protein ID:ENSMUSP00000001080
Original member NCBI NM_145974.3 NP_666086.2 Updated not alive Link to Nucleotide Sequence:NM_145974.3Link to Protein Sequence:NP_666086.2Re-query CCDS DB by Nucleotide ID:NM_145974Re-query CCDS DB by Protein ID:NP_666086
Current member NCBI NM_145974.4 NP_666086.2 Accepted alive Link to Nucleotide Sequence:NM_145974.4Link to Protein Sequence:NP_666086.2Re-query CCDS DB by Nucleotide ID:NM_145974Re-query CCDS DB by Protein ID:NP_666086Link to BLAST:NP_666086.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666086.2 537 Q8C7U1 537 100% 0 0

Chromosomal Locations for CCDS 24657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51643621 51644148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51644275 51644529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51645173 51645685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51645927 51646244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGCCACAACCTCAGGCCCTGCTGGCATTGCCATGGGCAGCGTAGGTAGCCTGTTGGAACGGCAAGACT
TTTCCCCTGAAGAACTTCGGGCCGCACTGGCTGGCTCCCGGGGCTCCCGGCAGCCCGATGGGCTCCTCCG
GAAAGGCTTGGGCCAACGAGAGTTCTTCAGCTACCTGCATCTCCCCAAGAAAGATGGCAAGACCACCAAG
CGAGCCCCTCGGAACGAGCCAGACTATGCCACCCTCTACTACCGGGAGCATCCTCGGGCTGGTGACTTCA
GCAAGACTTCCCTGCCTGAGCGGGGTCGCTTTGACAAGTGCCGAATCCGTCCTTCTGTGTTCAAGCCTCC
TGTGGGCTCTGGGAAAGGCTTCTTGTCCATGCAAAGCCTGGCAGCCCACAAGGGCCAGAAGTTGTGGCGA
AGCAACGGCAGCCTGCACACTCTGGCCTGTCACCCACCCCTGAGCCCTGGGCCTCGGGCCAGTCAGGCCC
GTGCACAGTTGCTTCACGCTCTCAGCCTAGATGAAGGTGGCCCTGAGCCCAGCCTGTCGGACTCTTCCAG
CGGGGGTAGTTTTGGCCGTAGTCCAGGTACTGGCCCCAGCCCCTTCAGCTCCTCCTTGGGCCACATTAAT
CACCTTGGAGGCTCCCTGGACCGTGCTCCAAGGAGCCCCAAGGAGTCTGGACCTCTGGCGGTCCTGAGCT
GCCTGCCCGAACCACCTCCCCCCTATGAGTTCTCCTGCCCCACTACTGAAGAGGTCGCCGTGTTGCCTGA
GGCCCGTGAAGAGCTCAAGAGGGACCTCGGTGACCAGGATGTTTCTAACTCCTTTACTCAGGTGCTAGAG
GAGCGCCAGCGGTTGTGGTTGTCTGAGCTGAAGCGTCTGTATGTGGAACGACTTCATGAGGTGGCCCAGA
AAGCTGAGCGCAGCGAGCGCAACCTCCAACTGCAGCTGTTTATGGCTCAACAGGAGCAGCGGCGCCTGCG
CAAGGAGCTGCGGGCTCAGCAGGGCCTGGCCCCAGAGCCTCGGACGTCTGGGTCCTCCATGGAGGCTGAC
CCCAATGCTCGGCCAGAGGAAGAAGCCCGATGGGAGGTGTGCCAGAAGACCGCGGAGATCAGTCTGTTGA
AACAGCAGCTCCGGGAAGCCCAGGCGGAGCTGGCACAGAAGCTGGCAGAGATCTTCAGTTTGAAGACGCA
ACTTCGGGGCAGCCGGGCACAAGCCCAGGCTCAGGACGCTGAGCTAGCCAGGCTGCGGGAGGCAGTGCAC
AGCCTGCAGGAGCAGGCACCGCGGGAGGAAGCCCCAGGCAGCTGCGAGACAGATGACTGCAAGAGCAGAG
GACTGCTGGGGGAGGCAGGAGGCAGTGAAGCCAGAGAAGGGGCCGAGCAGCTGAGGGCAGAGCTGCTGCA
AGAGCGGCTTAGGGGCCAGGAGCAGGCTCTGCGCTTTGAGCAGGAGAGGCAGACTTGGCAGGAGGAAAAG
GAGAGGGTGCTGCGCTACCAGCGAGAAATCCAAGGGAGCTACATGGACATGTACCGCCGCAACCAGGCAC
TTGAACACGAGCTGCGGCTGCTGCGGGAGCCTCCTACATCCTGGAGTCCCCGGCTGGAGTCCTCCAAGAT
CTGA

Translation (537 aa):
MATTSGPAGIAMGSVGSLLERQDFSPEELRAALAGSRGSRQPDGLLRKGLGQREFFSYLHLPKKDGKTTK
RAPRNEPDYATLYYREHPRAGDFSKTSLPERGRFDKCRIRPSVFKPPVGSGKGFLSMQSLAAHKGQKLWR
SNGSLHTLACHPPLSPGPRASQARAQLLHALSLDEGGPEPSLSDSSSGGSFGRSPGTGPSPFSSSLGHIN
HLGGSLDRAPRSPKESGPLAVLSCLPEPPPPYEFSCPTTEEVAVLPEAREELKRDLGDQDVSNSFTQVLE
ERQRLWLSELKRLYVERLHEVAQKAERSERNLQLQLFMAQQEQRRLRKELRAQQGLAPEPRTSGSSMEAD
PNARPEEEARWEVCQKTAEISLLKQQLREAQAELAQKLAEIFSLKTQLRGSRAQAQAQDAELARLREAVH
SLQEQAPREEAPGSCETDDCKSRGLLGEAGGSEAREGAEQLRAELLQERLRGQEQALRFEQERQTWQEEK
ERVLRYQREIQGSYMDMYRRNQALEHELRLLREPPTSWSPRLESSKI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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