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Report for CCDS24662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24662.1 Public Mus musculus 11 Jade2 23 108 98 CCDS HistoryNCBI Gene:76901Re-query CCDS DB by CCDS ID:24662.1Re-query CCDS DB by GeneID:76901See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020655.13 ENSMUSP00000020655.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020655.13Link to Ensembl Protein Viewer:ENSMUSP00000020655.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020655Re-query CCDS DB by Protein ID:ENSMUSP00000020655
Original member Current member EBI ENSMUST00000109091.1 ENSMUSP00000104719.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109091.1Link to Ensembl Protein Viewer:ENSMUSP00000104719.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109091Re-query CCDS DB by Protein ID:ENSMUSP00000104719
Original member NCBI NM_199299.4 NP_955003.2 Updated not alive Link to Nucleotide Sequence:NM_199299.4Link to Protein Sequence:NP_955003.2Re-query CCDS DB by Nucleotide ID:NM_199299Re-query CCDS DB by Protein ID:NP_955003
Current member NCBI NM_199299.5 NP_955003.2 Accepted alive Link to Nucleotide Sequence:NM_199299.5Link to Protein Sequence:NP_955003.2Re-query CCDS DB by Nucleotide ID:NM_199299Re-query CCDS DB by Protein ID:NP_955003Link to BLAST:NP_955003.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955003.2 829 Q6ZQF7-1 829 100% 0 0

Chromosomal Locations for CCDS 24662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51816895 51817700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51818497 51818628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51821079 51821196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51824943 51825407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51826559 51826675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51828266 51828433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51830416 51830627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51831253 51831413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51835573 51835730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51846606 51846700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51848994 51849051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2490 nt):
ATGGAAGAGAAGAGGCGAAAATATTCCATCAGCAGCGACAACTCTGATACCACTGACGGTCACGTGACAT
CCACATCAGCATCAAGATGTTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGGCAGAACGAGAA
GAAGCCCTCAGAGGTTTTCCGGACAGACTTGATCACAGCCATGAAGATCCCAGATTCATACCAGCTCAGC
CCGGATGACTACTACATCCTGGCGGACCCGTGGCGACAAGAATGGGAGAAAGGGGTGCAGGTACCTGCTG
GAGCGGAGGCCATTCCAGAGCCTGTGGTGAGGCTCCTCCCACCACTGAAAGGCCCCCCCACGCAGATGTC
CCCAGATAGCCCCACACTTGGTGAGGGTGCCCATCCTGACTGGCCAGGAGGCAGCCGCTACGACCTGGAT
GAGATCGATGCGTACTGGTTGGAACTTCTCAACTCGGAGCTCAAGGAGATGGAGAAGCCCGAGCTGGATG
AGCTAACGTTAGAGCGTGTTCTAGAGGAGCTAGAGACATTGTGCCACCAGAATATGGCACAGGCCATTGA
GACACAGGAGGGGCTGGGCATCGAGTACGACGAGGACGTTGTCTGCGACGTGTGCCGTTCCCCTGAAGGC
GAGGATGGCAACGAGATGGTCTTCTGTGACAAATGCAATGTCTGTGTGCACCAGGCATGCTACGGGATCC
TCAAGGTGCCTACGGGCAGCTGGCTGTGCCGGACCTGTGCCCTGGGAGTCCAGCCTAAGTGCCTGCTCTG
CCCCAAGCGAGGAGGAGCCCTGAAGCCCACTAGAAGTGGGACCAAGTGGGTACACGTCAGCTGTGCCCTG
TGGATTCCTGAGGTCAGCATTGGCTGTCCAGAGAAGATGGAGCCCATTACCAAGATCTCGCATATTCCGG
CCAGCCGCTGGGCCCTGTCCTGCAGCCTCTGCAAGGAGTGCACAGGTACCTGCATCCAGTGTTCCATGCC
TTCCTGCATCACAGCATTCCACGTTACGTGCGCCTTTGACCGAGGCCTGGAAATGCGGACTATATTAGCT
GACAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGGGGGCCCTCGGAGTGAGCCTA
CTTCTGAGCCTGTGGAGCCCAGCCAGGCCGTTGAGGATCTGGAAAAGGTGACCTTACGCAAGCAGCGGCT
GCAGCAGCTGGAAGAAAACTTCTATGAGCTAGTGGAGCCAGCTGAGGTGGCTGAACGGCTAGACCTGGCT
GAGGCACTGGTGGACTTCATCTACCAGTACTGGAAGTTGAAGCGGAGAGCTAATGCCAACCAGCCGCTGT
TGACGCCCAAGACTGACGAGGTGGACAACCTGGCCCAACAGGAACAGGATGTCCTCTATCGACGCCTGAA
GCTTTTCACCCACCTGCGGCAGGACCTGGAGAGGGTAAGGAACCTGTGCTACATGGTGACAAGACGGGAG
AGAACGAAACACACCATCTGTAAACTTCAGGAGCAGATATTCCATCTACAGATGAAACTTATTGAGCAAG
ACCTTTGCAGAGAGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAAAAAGGAAAGGCCGAGA
GGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAGAGAAAGTGAAGGCTGGGCCCGAGTCTGTGCTGGGGCAG
CTGGGTCTATCCACCTCGTTCCCCATCGACGGCACTTTCTTCAACAGCTGGTTGGCACAGTCGGTTCAGA
TCACAGCAGAGGACATGGCCATGAGCGAGTGGTCTTTGAACAGTGGGCACCGGGAGGATCCTGCTCCAGG
TCTGCTGTCAGAGGAATTGCTACAAGATGAGGAGACGCTGCTCAGCTTCATGAGGGACCCCTCGCTACGA
CCTGGTGACCCTGCCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGC
AGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGG
GACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCCTGCAGCT
GGGGACTGTCCAGTCCCAGCAACACTGGAAAGCCCTCCACCACTGGCCTCCGAGATACTAGACAAGACAG
CCCCCATGGCTTCCGACTTAAATGTCCAAGTGCCTGGCCCTACAGTGAGCCCCAAACCCTTGGGCAGGCT
CCGGCCACCCCGAGAGATGAAGGTCAGTCGGAAATCTCCGGGTGCTAGATCCGATGCTGGGACAGGACTA
CCGTCTGCTGTGGCCGAGAGGCCAAAGGTCAGCCTGCATTTTGACACCGAGGCTGACGGCTACTTCTCTG
ATGAGGAGATGAGCGATTCTGAGGTAGAGGCAGAGGACAGTGGGGTACAACGAGCTTCCAGGGAGGCAGG
GGCAGAGGAGGTGGTTCGCATGGGGGTGCTGGCCTCCTAA

Translation (829 aa):
MEEKRRKYSISSDNSDTTDGHVTSTSASRCSKLPSSTKSGWPRQNEKKPSEVFRTDLITAMKIPDSYQLS
PDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRLLPPLKGPPTQMSPDSPTLGEGAHPDWPGGSRYDLD
EIDAYWLELLNSELKEMEKPELDELTLERVLEELETLCHQNMAQAIETQEGLGIEYDEDVVCDVCRSPEG
EDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHVSCAL
WIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMPSCITAFHVTCAFDRGLEMRTILA
DNDEVKFKSLCQEHSDGGPRSEPTSEPVEPSQAVEDLEKVTLRKQRLQQLEENFYELVEPAEVAERLDLA
EALVDFIYQYWKLKRRANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRE
RTKHTICKLQEQIFHLQMKLIEQDLCREPSGRRSKGKKNDSKRKGREGPKGSSPEKKEKVKAGPESVLGQ
LGLSTSFPIDGTFFNSWLAQSVQITAEDMAMSEWSLNSGHREDPAPGLLSEELLQDEETLLSFMRDPSLR
PGDPARKARGRTRLPAKKKPSPLQDGPSARTTPDKQPKKAWAQDGKGTQGPPMRKPPRRTSSHLPSSPAA
GDCPVPATLESPPPLASEILDKTAPMASDLNVQVPGPTVSPKPLGRLRPPREMKVSRKSPGARSDAGTGL
PSAVAERPKVSLHFDTEADGYFSDEEMSDSEVEAEDSGVQRASREAGAEEVVRMGVLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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