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Report for CCDS2478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2478.1 Public Homo sapiens 2 CAB39 24 110 108 CCDS HistoryNCBI Gene:51719Re-query CCDS DB by CCDS ID:2478.1Re-query CCDS DB by GeneID:51719See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258418.10 ENSP00000258418.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258418.10Link to Ensembl Protein Viewer:ENSP00000258418.5Re-query CCDS DB by Nucleotide ID:ENST00000258418Re-query CCDS DB by Protein ID:ENSP00000258418
Original member Current member EBI ENST00000409788.7 ENSP00000386238.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409788.7Link to Ensembl Protein Viewer:ENSP00000386238.3Re-query CCDS DB by Nucleotide ID:ENST00000409788Re-query CCDS DB by Protein ID:ENSP00000386238
Original member Current member EBI ENST00000410084.7 ENSP00000386642.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410084.7Link to Ensembl Protein Viewer:ENSP00000386642.3Re-query CCDS DB by Nucleotide ID:ENST00000410084Re-query CCDS DB by Protein ID:ENSP00000386642
Original member Current member NCBI NM_001130849.2 NP_001124321.1 Accepted alive Link to Nucleotide Sequence:NM_001130849.2Link to Protein Sequence:NP_001124321.1Re-query CCDS DB by Nucleotide ID:NM_001130849Re-query CCDS DB by Protein ID:NP_001124321Link to BLAST:NP_001124321.1
Original member Current member NCBI NM_001130850.2 NP_001124322.1 Accepted alive Link to Nucleotide Sequence:NM_001130850.2Link to Protein Sequence:NP_001124322.1Re-query CCDS DB by Nucleotide ID:NM_001130850Re-query CCDS DB by Protein ID:NP_001124322Link to BLAST:NP_001124322.1
Original member Current member NCBI NM_016289.4 NP_057373.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016289.4Link to Protein Sequence:NP_057373.1Re-query CCDS DB by Nucleotide ID:NM_016289Re-query CCDS DB by Protein ID:NP_057373Link to BLAST:NP_057373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124321.1 341 Q9Y376 341 100% 0 0
NP_001124322.1 341 Q9Y376 341 100% 0 0
NP_057373.1 341 Q9Y376 341 100% 0 0

Chromosomal Locations for CCDS 2478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 230760002 230760115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230790872 230791036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230793213 230793331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230798729 230798897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230810263 230810322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230814049 230814114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230817754 230817897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230818516 230818704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGCCGTTCCCGTTTGGGAAGTCTCACAAATCTCCAGCAGACATTGTGAAGAATCTGAAGGAGAGCATGG
CTGTTCTGGAAAAGCAAGACATTTCTGATAAAAAAGCAGAAAAGGCTACAGAAGAAGTTTCCAAAAATCT
GGTTGCCATGAAAGAAATTCTGTATGGCACAAATGAAAAAGAGCCTCAGACAGAAGCAGTAGCTCAACTT
GCTCAAGAACTCTATAATAGTGGGCTCCTTAGCACCCTGGTAGCTGATTTACAGCTCATTGACTTTGAGG
GCAAAAAAGACGTGGCTCAAATTTTCAACAATATTCTCAGAAGACAAATTGGTACGAGAACTCCTACTGT
TGAATACATCTGCACCCAACAGAATATTTTGTTCATGTTATTGAAAGGGTATGAATCTCCAGAAATAGCT
CTAAATTGTGGAATAATGTTAAGAGAATGCATCAGACATGAACCACTTGCAAAAATCATTTTGTGGTCGG
AACAGTTTTATGATTTCTTCAGATATGTCGAAATGTCAACATTTGACATAGCTTCAGATGCATTTGCCAC
ATTCAAGGATTTACTTACAAGACATAAATTGCTCAGTGCAGAATTTTTGGAACAGCATTATGATAGATTT
TTCAGTGAATATGAGAAGTTACTTCATTCAGAAAATTATGTGACAAAAAGACAGTCACTGAAGCTTCTCG
GTGAACTACTACTAGATAGACACAACTTCACAATTATGACAAAATACATCAGTAAACCTGAGAACCTCAA
ATTAATGATGAACCTGCTGCGAGACAAAAGTCGCAACATCCAGTTTGAGGCCTTTCACGTTTTTAAGGTG
TTTGTAGCCAATCCTAACAAGACGCAGCCCATCCTAGACATCCTCCTCAAGAACCAGGCCAAACTCATAG
AGTTCCTCAGCAAGTTTCAGAACGACAGGACGGAGGATGAGCAGTTTAACGACGAGAAGACCTATTTAGT
TAAACAGATCAGGGATTTGAAGAGACCAGCTCAGCAAGAAGCTTAA

Translation (341 aa):
MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQL
AQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIA
LNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRF
FSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKV
FVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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