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Report for CCDS2482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2482.1 Public Homo sapiens 2 PSMD1 24 110 108 CCDS HistoryNCBI Gene:5707Re-query CCDS DB by CCDS ID:2482.1Re-query CCDS DB by GeneID:5707See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2482.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308696.11 ENSP00000309474.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308696.11Link to Ensembl Protein Viewer:ENSP00000309474.6Re-query CCDS DB by Nucleotide ID:ENST00000308696Re-query CCDS DB by Protein ID:ENSP00000309474
Original member Current member EBI ENST00000677230.1 ENSP00000503068.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677230.1Link to Ensembl Protein Viewer:ENSP00000503068.1Re-query CCDS DB by Nucleotide ID:ENST00000677230Re-query CCDS DB by Protein ID:ENSP00000503068
Original member Current member NCBI NM_002807.4 NP_002798.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002807.4Link to Protein Sequence:NP_002798.2Re-query CCDS DB by Nucleotide ID:NM_002807Re-query CCDS DB by Protein ID:NP_002798Link to BLAST:NP_002798.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002798.2 953 Q99460-1 953 100% 0 0

Chromosomal Locations for CCDS 2482.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 231057026 231057041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231061267 231061310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231062248 231062321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231062506 231062675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231066906 231067111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231070025 231070168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231072189 231072415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231075511 231075571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231077034 231077162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231078659 231078747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231079536 231079614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231080141 231080314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231082883 231082994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231083567 231083763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231085019 231085114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231087117 231087181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231138736 231138850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231146240 231146356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231153564 231153666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231161340 231161509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231163635 231163727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231165200 231165286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231165871 231166017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231170566 231170712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGATCACCTCGGCCGCTGGAATTATTTCTCTTCTGGATGAAGATGAACCACAGCTTAAGGAATTTGCAC
TACACAAATTGAATGCAGTTGTTAATGACTTCTGGGCAGAAATTTCCGAGTCCGTAGACAAAATAGAGGT
TTTATACGAAGATGAAGGTTTCCGGAGTCGGCAGTTTGCAGCCTTAGTGGCATCTAAAGTATTTTATCAC
CTGGGGGCTTTTGAGGAGTCTCTGAATTATGCTCTTGGAGCAGGGGACCTCTTCAATGTCAATGATAACT
CTGAATATGTGGAAACTATTATAGCAAAATGCATTGATCACTACACCAAACAATGTGTGGAAAATGCAGA
TTTGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGTAAATAAAATGTTCCAGCGA
TGTCTAGATGATCACAAGTATAAACAGGCTATTGGCATTGCTCTGGAGACACGAAGACTGGACGTCTTTG
AAAAGACCATACTGGAGTCGAATGATGTCCCAGGAATGTTAGCTTATAGCCTTAAGCTCTGCATGTCTTT
AATGCAGAATAAACAGTTTCGGAATAAAGTACTAAGAGTTCTAGTTAAAATCTACATGAACTTGGAGAAA
CCTGATTTCATCAATGTTTGTCAGTGCTTAATTTTCTTAGATGATCCTCAGGCTGTGAGTGATATCTTAG
AGAAACTGGTAAAGGAAGACAACCTCCTGATGGCATATCAGATTTGTTTTGATTTGTATGAAAGTGCTAG
CCAGCAGTTTTTGTCATCTGTAATCCAGAATCTTCGAACTGTTGGCACCCCTATTGCTTCTGTGCCTGGA
TCCACTAATACGGGTACTGTTCCGGGATCAGAGAAAGACAGTGACTCGATGGAAACAGAAGAAAAGACAA
GCAGTGCATTTGTAGGAAAGACACCAGAAGCCAGTCCAGAGCCTAAGGACCAGACTTTGAAAATGATTAA
AATTTTAAGTGGTGAAATGGCTATTGAGTTACATCTGCAGTTCTTAATACGAAACAATAATACAGACCTC
ATGATTCTAAAAAACACAAAGGATGCAGTACGGAATTCTGTATGTCATACTGCAACCGTTATAGCAAACT
CTTTTATGCACTGTGGGACAACCAGTGACCAGTTTCTTAGAGATAATTTGGAATGGTTAGCCAGAGCCAC
TAACTGGGCAAAATTTACTGCTACAGCCAGTTTGGGTGTAATTCATAAGGGTCATGAAAAAGAAGCATTA
CAGTTAATGGCAACATACCTTCCCAAGGATACTTCTCCAGGATCAGCCTATCAGGAAGGTGGAGGTCTCT
ATGCACTAGGTCTTATTCATGCCAATCATGGTGGTGATATAATTGACTATCTGCTTAATCAGCTTAAGAA
CGCCAGCAATGATATCGTTAGACACGGTGGCAGTCTGGGCCTTGGTTTGGCAGCCATGGGAACTGCACGT
CAAGATGTTTATGATTTGCTAAAAACAAACCTTTATCAGGATGATGCAGTAACAGGGGAAGCAGCTGGCC
TGGCCCTAGGTTTGGTTATGTTGGGCTCTAAAAATGCTCAGGCTATTGAGGACATGGTTGGTTATGCACA
AGAAACTCAACATGAGAAGATTCTGCGTGGTCTTGCAGTTGGCATAGCTTTAGTAATGTATGGGAGGATG
GAAGAGGCTGATGCTCTCATTGAATCTCTCTGTCGTGACAAGGACCCAATTCTTCGAAGGTCTGGAATGT
ATACTGTAGCCATGGCTTATTGTGGCTCTGGTAACAACAAAGCAATTCGACGCCTGCTACATGTTGCTGT
AAGTGATGTTAATGATGATGTCAGGAGGGCAGCAGTAGAATCACTTGGGTTCATTCTATTCAGAACCCCT
GAACAGTGCCCAAGTGTTGTCTCTTTGTTGTCAGAGAGTTACAACCCTCATGTGCGCTACGGAGCTGCAA
TGGCCTTGGGGATATGCTGTGCTGGTACAGGAAACAAGGAAGCCATTAATTTGCTAGAACCAATGACAAA
CGACCCCGTGAACTACGTGAGGCAAGGGGCACTCATAGCTTCAGCTCTCATCATGATCCAGCAGACTGAA
ATCACTTGTCCAAAGGTGAATCAGTTCAGACAGCTGTATTCCAAAGTCATCAATGATAAGCATGATGATG
TCATGGCCAAGTTTGGCGCTATTCTGGCCCAGGGCATACTGGATGCAGGTGGTCATAATGTCACAATCTC
CTTGCAGTCCAGGACTGGGCATACTCATATGCCTTCTGTGGTTGGCGTCCTTGTATTTACCCAGTTTTGG
TTCTGGTTTCCTCTTTCACACTTCCTGTCATTGGCTTATACCCCTACCTGTGTCATTGGCCTTAACAAGG
ACTTAAAGATGCCGAAAGTTCAGTATAAATCGAACTGTAAACCATCCACATTTGCATATCCTGCCCCTCT
GGAAGTACCAAAAGAAAAAGAAAAGGAAAAGGTTTCTACTGCTGTATTATCTATAACTGCCAAGGCTAAA
AAGAAGGAAAAAGAAAAGGAAAAAAAGGAGGAGGAGAAAATGGAAGTGGATGAGGCAGAGAAAAAGGAGG
AAAAAGAGAAGAAAAAAGAACCTGAGCCAAACTTCCAGTTATTGGATAACCCAGCCCGAGTTATGCCTGC
CCAGCTTAAGGTCCTAACCATGCCGGAGACCTGTAGATACCAGCCTTTCAAACCACTCTCTATTGGAGGC
ATCATCATTCTGAAGGATACCAGTGAAGACATTGAGGAGCTGGTGGAACCTGTGGCAGCACATGGCCCAA
AAATCGAGGAGGAGGAACAAGAGCCAGAACCCCCAGAACCATTTGAGTATATTGATGATTAA

Translation (953 aa):
MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVASKVFYH
LGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQR
CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEK
PDFINVCQCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPG
STNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDL
MILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTAR
QDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRM
EEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTP
EQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTE
ITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFW
FWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK
KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGG
IIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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