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Report for CCDS25109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25109.1 Public Mus musculus 11 Poldip2 23 108 98 CCDS HistoryNCBI Gene:67811Re-query CCDS DB by CCDS ID:25109.1Re-query CCDS DB by GeneID:67811See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001127.10 ENSMUSP00000001127.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001127.10Link to Ensembl Protein Viewer:ENSMUSP00000001127.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001127Re-query CCDS DB by Protein ID:ENSMUSP00000001127
Original member NCBI NM_026389.3 NP_080665.1 Updated not alive Link to Nucleotide Sequence:NM_026389.3Link to Protein Sequence:NP_080665.1Re-query CCDS DB by Nucleotide ID:NM_026389Re-query CCDS DB by Protein ID:NP_080665
Current member NCBI NM_026389.4 NP_080665.1 Accepted alive Link to Nucleotide Sequence:NM_026389.4Link to Protein Sequence:NP_080665.1Re-query CCDS DB by Nucleotide ID:NM_026389Re-query CCDS DB by Protein ID:NP_080665Link to BLAST:NP_080665.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080665.1 368 Q91VA6 368 100% 0 0

Chromosomal Locations for CCDS 25109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78512312 78512472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78513920 78514001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78515088 78515185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78516819 78516915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78517553 78517628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78517825 78517932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78518073 78518209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78518953 78518979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78519180 78519305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78521152 78521231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78521794 78521908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCTGGTTGTGTGGCCCGACGGGCCCTAGCAGTGGGCAGCCGCTGGTGGTCTCGGTCGCTGGCCACGA
CCCGAGGGTCGAGGCCACTGTGTGCGGTCGGTGGAGCAGGGGGCCTTCCGCCGGTGGCCACAGCGACGAC
CCGAAGGCATCTGTCGTCCCGGAACCGTGCAGAGGGCAAAGTGCTGGAGACAGTTGGTGTGTTTGAGGTG
CCAAAACAAAATGGAAAATATGAGACTGGGCAGCTATTCCTCCATAGTGTTTTTGGCTACCGAGGGGTCG
TCCTGTTTCCCTGGCAGGCCAGACTGTATGACCGGGATGTGGCTTCTGCAACTCCAGAAAAAGCAGAGAA
CCCTGCCGGCCATGGCTCTAAGGAGGTGAAAGGCAAAACTCACACTTACTACCAAGTGCTGATTGATGCC
CGTGACTGCCCACATATATCTCAGAGATCTCAGACAGAAGCTGTGACCTTCTTGGCTAACCATGATGACA
GCCGGGCGCTCTATGCTATCCCAGGGTTGGACTATGTCAGCCATGAAGACATCCTCCCCTACACCTCCAC
GGATCAGGTTCCCATTCAACACGAGCTCTTTGAAAGATTTCTTCTGTATGACCAGACAAAAGCACCTCCT
TTTGTGGCTCGAGAAACGCTGCGGGCCTGGCAAGAGAAGAATCACCCGTGGCTAGAGCTCTCTGACGTGC
ACAGGGAGACCACCGAGAACATCCGCGTCACAGTCATCCCTTTCTACATGGGCATGAGGGAAGCCCAGAA
TTCCCACGTCTACTGGTGGCGCTATTGTATACGCTTGGAAAACTTGGACAGTGATGTGGTACAGCTCCGG
GAGCGGCACTGGCGGATATTCAGTCTCTCAGGGACCCTGGAAACAGTTCGAGGACGAGGGGTGGTGGGCA
GGGAACCAGTGTTATCCAAGGAGCAGCCTGCATTCCAGTATAGCAGCCATGTCTCTCTGCAAGCTTCCAG
TGGGCACATGTGGGGCACATTTCGTTTTGAGAGACCGGATGGCTCCCACTTTGATGTCCGGATCCCACCA
TTCTCCTTGGAAAGCAATAAAGATGAGAAGACCCCACCCTCAGGCCTTCACTGGTAG

Translation (368 aa):
MAGCVARRALAVGSRWWSRSLATTRGSRPLCAVGGAGGLPPVATATTRRHLSSRNRAEGKVLETVGVFEV
PKQNGKYETGQLFLHSVFGYRGVVLFPWQARLYDRDVASATPEKAENPAGHGSKEVKGKTHTYYQVLIDA
RDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPP
FVARETLRAWQEKNHPWLELSDVHRETTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLR
ERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPP
FSLESNKDEKTPPSGLHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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