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Report for CCDS25125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25125.1 Public Mus musculus 11 Suz12 23 108 98 CCDS HistoryNCBI Gene:52615Re-query CCDS DB by CCDS ID:25125.1Re-query CCDS DB by GeneID:52615See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017692.14 ENSMUSP00000017692.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017692.14Link to Ensembl Protein Viewer:ENSMUSP00000017692.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000017692Re-query CCDS DB by Protein ID:ENSMUSP00000017692
Original member Current member NCBI NM_199196.2 NP_954666.1 Accepted alive Link to Nucleotide Sequence:NM_199196.2Link to Protein Sequence:NP_954666.1Re-query CCDS DB by Nucleotide ID:NM_199196Re-query CCDS DB by Protein ID:NP_954666Link to BLAST:NP_954666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954666.1 741 Q80U70 741 100% 0 0

Chromosomal Locations for CCDS 25125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 79993320 79993599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79995617 79995663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79995745 79995809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79999057 79999125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80007513 80007562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80010558 80010643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80013364 80013595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80015143 80015236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80019679 80019784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80022092 80022269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80024910 80025001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80025168 80025311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80025797 80025954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80029148 80029346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80030007 80030086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80031845 80032190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGGCGCCTCAGAAGCACGGCGGTGGGGGAGGGGGCGGCTCGGGGCCCAGCGCGGGGTCCGGGGGAGGCG
GCTTCGGGGGTTCGGCGGCGGCGGTGGCGGCGGCGGCTTCGGGCGGCAAATCCGGCGGCGGGGGCTGTGG
AGGCGGCGGCAGTTACTCGGCCTCCTCCTCCTCGGCGGCGGCCGCGGCGGCGGCGGCGGGGGCCGCGGTG
TTGCCGGTGAAGAAGCCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTCCTCCAGGCCTTTGAGA
AACCAACACAGATATATAGATTTCTTCGAACTCGAAATCTTATCGCACCAATATTTTTGCACAGAACTCT
TACTTACATGTCTCATCGAAATTCCAGAACAAGCATCAAAAGGAAAACATTTAAAGTTGATGATATGTTA
TCAAAAGTAGAGAAAATGAAAGGAGAGCAAGAATCTCATAGCTTGTCTGCACATTTGCAACTTACATTTA
CCGGTTTCTTCCACAAAAATGATAAGCCATCACAAAACTCAGAAAATGAACAAAATTCTGTTACCCTGGA
AGTCCTGCTTGTGAAAGTTTGCCACAAAAAAAGGAAGGATGTAAGTTGTCCAATAAGACAAGTCCCTACT
GGTAAAAAGCAGGTGCCTTTGAATCCTGACCTCAATCAAACAAAACCAGGAAATTTTCCATCCCTGGCAG
TTTCCAGTAATGAATTTGAACCTAGTAACAGCCATATGGTGAAGTCCTACTCGTTGCTGTTTAGAGTAAC
TCGTCCAGGAAGAAGAGAATTTAATGGAATGATTAATGGAGAAACCAATGAAAATATTGATGTCAGTGAA
GAACTTCCAGCCAGAAGAAAACGAAATCGCGAAGATGGAGAAAAGACATTTGTTGCACAAATGACAGTTT
TTGACAAAAACAGGCGTTTACAGCTTTTAGATGGGGAATATGAAGTGGCCATGCAGGAAATGGAAGAATG
TCCAATAAGTAAGAAAAGAGCAACATGGGAGACAATTCTTGATGGGAAGAGGCTGCCTCCATTTGAGACA
TTTTCTCAGGGACCTACATTACAATTTACTCTTCGATGGACAGGAGAAACCAACGATAAGTCTACAGCTC
CTGTTGCCAAGCCTCTTGCCACTAGAAATTCAGAGAGCCTTCATCAGGAAAATAAGCCTGGTTCTGTTAA
ACCTGCACAAACTATTGCTGTTAAGGAGACGCTGACTACAGAGCTGCAAACAAGAAAAGAAAAGGATAAT
TCAAATGAAAGTCGCCAGAAGTTAAGAATATTTTATCAGTTCCTTTATAACAATAATACAAGACAACAGA
CAGAAGCCAGAGACGACCTGCACTGCCCGTGGTGCACTCTGAACTGCCGTAAACTGTATAGCTTACTCAA
ACATCTAAAGCTCTGCCACAGCAGGTTCATCTTCAATTACGTATATCATCCAAAAGGTGCTAGGATAGAT
GTTTCAATCAATGAGTGTTATGATGGCTCCTATGCAGGAAATCCTCAGGATATACATCGCCAACCTGGAT
TTGCTTTTAGTCGAAATGGACCGGTAAAGAGAACACCTATCACACATATTCTTGTTTGCAGGCCAAAAAG
AACAAAAGCAAGCATGTCGGAGTTTCTTGAATCTGAAGATGGAGAAGTGGAGCAGCAGAGAACATACAGC
AGTGGCCACAATCGTCTCTATTTCCACAGTGATACCTGCTTACCTCTTCGGCCACAAGAAATGGAAGTAG
ATAGTGAAGATGAGAAAGATCCAGAATGGCTGAGAGAAAAAACCATTACTCAAATTGAAGAATTTTCTGA
TGTGAATGAAGGAGAGAAAGAAGTGATGAAGCTGTGGAACCTCCATGTCATGAAGCATGGATTTATTGCT
GACAATCAAATGAATCATGCCTGTATGCTGTTTGTAGAAAATTATGGACAGAAAATAATTAAGAAGAATT
TATGTCGAAACTTCATGCTTCATCTAGTCAGCATGCATGACTTTAATCTTATTAGCATAATGTCAATAGA
TAAAGCTGTTACCAAGCTCCGAGAAATGCAGCAAAAACTAGAAAAAGGAGAATCTGCGACCCCTTCAAAT
GAAGAAATAGCTGAGGAACAAAATGGAACAGCAAATGGATTCAGTGAAACTAACTCAAAAGAGAAAGCTT
TGGAAACTGACGGTGTCTCAGGGGTTCCAAAACAGAGCAAGAAACAAAAACTCTGA

Translation (741 aa):
MAPQKHGGGGGGGSGPSAGSGGGGFGGSAAAVAAAASGGKSGGGGCGGGGSYSASSSSAAAAAAAAGAAV
LPVKKPKMEHVQADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSHRNSRTSIKRKTFKVDDML
SKVEKMKGEQESHSLSAHLQLTFTGFFHKNDKPSQNSENEQNSVTLEVLLVKVCHKKRKDVSCPIRQVPT
GKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNSHMVKSYSLLFRVTRPGRREFNGMINGETNENIDVSE
ELPARRKRNREDGEKTFVAQMTVFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWETILDGKRLPPFET
FSQGPTLQFTLRWTGETNDKSTAPVAKPLATRNSESLHQENKPGSVKPAQTIAVKETLTTELQTRKEKDN
SNESRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARID
VSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTKASMSEFLESEDGEVEQQRTYS
SGHNRLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVMKHGFIA
DNQMNHACMLFVENYGQKIIKKNLCRNFMLHLVSMHDFNLISIMSIDKAVTKLREMQQKLEKGESATPSN
EEIAEEQNGTANGFSETNSKEKALETDGVSGVPKQSKKQKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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