NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25127.1 Public Mus musculus 11 Atad5 23 108 98 CCDS HistoryNCBI Gene:237877Re-query CCDS DB by CCDS ID:25127.1Re-query CCDS DB by GeneID:237877See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017694.6 ENSMUSP00000017694.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017694.6Link to Ensembl Protein Viewer:ENSMUSP00000017694.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000017694Re-query CCDS DB by Protein ID:ENSMUSP00000017694
Original member Current member NCBI NM_001029856.2 NP_001025027.1 Accepted alive Link to Nucleotide Sequence:NM_001029856.2Link to Protein Sequence:NP_001025027.1Re-query CCDS DB by Nucleotide ID:NM_001029856Re-query CCDS DB by Protein ID:NP_001025027Link to BLAST:NP_001025027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025027.1 1826 Q4QY64-1 1826 100% 0 0

Chromosomal Locations for CCDS 25127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80089771 80089836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80094155 80096022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80097953 80098049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80100314 80100475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80101782 80101908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80103260 80103341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80106254 80106438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80108483 80108637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80109364 80109523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80109947 80110135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80111475 80111571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80112749 80112837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80113075 80113214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80114156 80114306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80118965 80119141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80119467 80119603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80120682 80120775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80124067 80124131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80127257 80127437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80131204 80131382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80132465 80133306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80134029 80134187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80134293 80134371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5481 nt):
ATGGTGGGGGTCCTGAGCATGGCGGCGGCTGCAGCACCCCTTCCTGTGAAGGACTACGAGATTGAGCCAT
GCAAAAAGCGGAGAAAAGATGATGACAACTCTTCCTGCGAAACAATCACCAAATATTTATCACCAATAGG
GAAGACTGGAGACAAGGTTTTCTCTCCACCAAAACCCAGTAATATTCTACATTATTTTAGAAAGACCTCA
CTCACAACCGAGAAGCCACAATCGACAAAGGCGTACAAAATAAAGCCATCTCCCCCATTGCTTGTTGGCA
ACAGCAAAGACTGTAAGACGCCATTGGAAGTATTCTCAAATAGAGAATTTAAGAGGAAAAGAAAGAGAGT
TAGTTTATCCTCTCAACTGAATGATATTAAAATTCAGGATGAGTGTCCAGTTGAAATTAGTAACAATGAT
AGTAAGGAGGACGGTGGTTTAAGTGATTGTGTGGAAAGCAGTGCTTCTGTTTCCCTTTACAAGGAACATG
TGGAGGTTCTCGCAGAAAGTATTGAAGACAGCAGAAACCAGCCAAATACTAAGTCCTCCAAAAAGAAAGT
AAATCCTAAACAATGCACCACAAAAAGTGATGACAGGATACTGAGGAAGAGGAAGCGTAGCAAGGTAACG
GGTCAGTCTGAAAGTGTGCCCTTAGCAGATGAACTTAGTCTGCCTGAGGATGGTGGCAAAGACAGCAAGC
TGACTAAACCTTCCCTAGCTGAGGAAAACGACTCCAGGACTCATGCAACCAAAAGAGCTGATTTAAAGGA
GAGTACAATTACTGTCTCCTATGAGGAATTTGTAAAAAGTCACAAGGCAGCTAAAGTGGAAGAGATACCT
GACCCTGCAGTTCCAGCCTGTGTTCCTTCTGGGCCAGGTGAAGCAGTCAAAAGTGGTTCTGAAGGCGAAT
TGTCGGGAAGCTGCGAACCATCGCCACAGCTGCACCTCAAGACAGTTACTGTTCTTGCACAAGTTCACCC
CACTCCCCCTAAGAAGAAAGGGAAAATACCCCCAATTTTCTTGAAACAGAAGCAGCCTGAGCTGGAGAAT
AGTCTCTCTGACCCAGAAAATGAGCAGCCAGTTCAGAAGAGGAAATCTAATGTTGTGATCCAGGAGGGCC
AATTAGAGCTGGCGGTGCTGGAAGCCTGGAACTCTGAGGCTTCAGTACCAAAGTGCAGCATGGAGGAAAG
ACAGCAGTTCATGAGAGCATTTAGGCAGCCACCGCCAGACACGCTCAAAAATGGATTCAAGAAACCTCTG
GAGAAGCAGAAAGACCCAAGTGAAAAATCTGTCCATGAAGGAGATAGCAGTTCTGAAAAAATTATAGAAA
ATCCTAATATTCAAAGAGTTTCAAGCCAAGGCTGTCTACAGTCACATGCCGATAGAGGAAGTTTTCCTAA
GGAGAAAAGTAAAAAGCCAAATAAAAAGGGTAAGAAAACTAGGACTACTGCAGGTGGAAACAGAGAAGAA
AACATACAAAAGGAAAAAACAGCCTTTTCCTTAAAAGATGAACAGGATCAAAATAGCCTACGAAGGAGTG
TAAGACAGAAATCAGAAGTTCTCAAAAGCAATGCATTACTTAACAGTGAAAATCTTGTTTGTGAGGATAC
GGCACATGACTCTGTACAAATGTCTCTGTGTAATAGAAATAAGTCAAGAAGCAGCAGCACACCAACCAGG
GATATGGTTACACATCACAGAGCTGAGCCTGGAAGTAGCCTGGAGTATGTCTCTACACGCCAACCAATCA
GGAGATCTCTGAGAAGTTGCAGCACGCCTGCAACAAATGCTCTGGGAGGTACTGAGTCTGAGGATGCTCA
GGACACTATTCCAGTGAAGGCTTCCACCCCAAAATCAGCCAGAACATCAGAAAAGCACAACCTGTATACA
GCAGAATTAATAATAGTATCTTCTGATTCCGAGAGCCCCATTAGAATGAAATTCACTAGAATTAGTACTC
CCAAAAAATCCAAGAAAAGTTCTAAGAAATCTGAAACAACTGAGGAAGAGCTCACTTCTCAGAAGAAAAA
GGCAAATAGTACTTCAAAAAATATATCAAAAGCAAAAGAACTGATTGAGGAAGCAAAAGCATTCCAAATT
GGCGGATCAAAGACTGAAGAAACAGTGGTACCCTTGAGGCGGTCCTCTAGGCACCAGGCACGTTCTGCAA
AGGAGAAGTCGCCAGAGATAGATGACTCTGTAATAGTAATAGACTCAAGTCCAACTTCTATAAGAGAACC
AGAGAAAAGTCAGAAGAAACTTCAGAATCTGAATGATGTACTAGGAAAAAAACTTAACAAGTCTTCTAAA
AATGTCCCTGGAAAAATGAAAATTGCTCCTTTATTTCTTGCCAAAAGGACCAAAAGAGCAGCCATTCCTG
TCTTTGATTTGGATGAAAGCAGTCAAGATTCATCAGAACAAACTCAGGATTGTGATGTACAGTTTAAAGC
AAAGCGTGATTTTCTAATGAGTGGTTTGCCAGATTTACTGAAACGTCAGATTGCAAAGAAAGCTGCTGCA
TTAGATGTGTACAATGCAGTGAGTACAAGTTTCCAGAGGGTTGTTCATGTACAACAGAAGGATGATGAAT
ATTGGTTATGGCATTTGAAGCCACCTTCTTGTCCTCTGTTAACTGAATTTAAGGAATTAAATACTAAAGT
AACAGATCTCTCAGAATATGTTGTTGCTTTTGGTGAATTTTCCACCTTGAATCCAAATCCAAGAAGTAAT
CCTGCTGCTGTGATGATGAGGACAAGGAAGGACTTTACTAAAGAAGTAAGAAACCTTTTGCTGGAGGAAA
TAAAGTGCTCAAATCCAGAATTTTCTTTGGAAAAATATTTTCCCTTGCTTCTTAAAAAACGAATTGAACA
CCAGGTACTTTGTGAGGGTCATGGTAAACAAGCAAGTCCACAACTACAGCCTGATGTCAGTCAAAAAGAA
ACCAAAAGGAAACAAGTGGCAACGGGAAATCAGAAGTCAAAAAGAAAGAGACAAAATGAATATTCAGTGA
GCCCGGAAGAGATGAAGGGGAGATCAAAAGACCTTGACGAAAGAATCAGCTCTTCTTGTACAAATCTAGA
TCCTTCCAGAGATTCTGGAACTGAAGACATGCTTTGGACAGAAAAGTACCAACCTCAGAATTCGAATGAA
CTCATAGGCAATGAGTTAGCTGTCAAAAAGTTACATAGTTGGTTGAAGGACTGGAAAAGAAGAGCTGAAC
TGGAAGAAAGACATAATTTGAAAGGAAAGAGAGATGAAAAAGAGGAAGGTATTTTGGATTTATCGGATAG
CACGGACTTTAAAGGCAGTTCAGATGATGAAGAGAATCGTCTTTGCAACACTGTTCTTATAACAGGACCA
ACGGGAGTGGGAAAAACTGCTGCCGTGTATGCTTGTGCTCAGGAGCTTGGGTTTAAGATATTTGAAGTGA
ATGCCTCTTCACAGCGAAGTGGTAGGCAAATCCTGTCTCAGCTGAAGGAAGCTACCCAGTCCCATCAAGT
AGATAAGCAAGGTGTAAACTCACAAAAACCCTGTTTCTTTAACAACTACAACATTGGCAAGTCACCAAAA
AAGTTAAACTCCCCGGGGAAAGTTGTTACATCACCAAGGAAGCTTCCTCCATCGTCACCAAAGACAAGTG
GGCAGAAGCGAGCACTTCTTCCTAAAACTTTGGCAAATTACTTTAAAGTGTCCTCCAAATCCAAAAGTAA
TGACGACGTAGGAGCACTCATGGGAGATGACAAAGGAGTCAAAAATTCGTCTTTGGAACAGAGGCAACTT
ATTCAGACTAAATCAACCAATGCAAATAATTCACATATTAAAGATGTTGGAGCTGAAGAATCCAACAGGA
AGAAGGCGACATCACTCATTCTCTTTGAGGAGGTTGATGTCATTTTTGATGAAGATGCTGGGTTTTTGAA
TGCAGTCAAAACCTTCATGGCAACAACTAAACGACCAGTAATTCTCACGACAAGTGATCCCACATTTAGT
CTAGTGTTTGATGGCTGCTTTGAAGAAATCAATTTCAGTATTCCTTCCCTGCTAAATGTTGCCAGCTATC
TACAAGTGATTTGTCTAGTTGAGAATTTCAGAACTGACTTTAAAGACTTTGTAACCTTGTTGACTGCAAA
TGCTTGTGACATCAGAAAAAGTATCCTTTACTTACAGTTTTGGATTAGAAGTGGAGGTGGAATTTTAGAA
GAAAGGCCATTATCACACTGTCGAGAAAATAGCAGAAATACACTGGTTTGTTCAGAAGATGGCTCTGATG
CAAACATCAACTCTAAAAAACCCAAAAGGAACCGTGTGGCCCTCCCCAGGTGTGACACTGGCTGTGCAGA
GGCTTTGTTTGGACTCAAGAACATTGCCTCCCCATCCCAGGACTTACTTTCATTATTGAAGCACAAGATC
ACAACAAAGGAAGAATGGCAGAAACTCATTCAGGTTCTCACCGAATTCCACGTGCAAAATATCGATCTGC
TACATAGTAACCTTGAGGTCATCCTGCCACTGCCAGTTCATGTGGTTCCAGATGTAAGGGGTGCTTATGG
CTTCCCAGTGACTACACAGGCCAGTGCACCAGCAAGCATGGGGCATCTTACCAGGAAGCAGTCAAAAGAC
CAGCCATTGAGAAAGTCACAGAAAAGGAAACAGAAAAAGATGGTGATCCTAGATGACAGTGACCTGTTTG
ACACTGGCCTAGACTTTTCTGGTGAACTGCCTAGCCTATCTCCTGCACCCTCCTTGTCTGTAGAAGACAA
CATAAGAAGAGACAGCAATCCAGAGATTAAGACACAGAACAGTGGTTTCAAGCCCCACTCTGTACCTCAG
CCCCCTAAGACACTAGCAGAGAAGAAGTGTTGCATGCTCGTTTCCCACTGTTTAAATTCTCTCAGTGAGT
TCATGGAGAACATGTCCTTCATAGATGCTCTTTTAACAGATCCAGGGGAACAGAATGAATTGGGTAGAAG
TGCCTTTCACTGGACAAATGGAAGGGTTAAAAGTGGACTTTGTGATGAGTTTAGTCTTGAGAATAGAGAC
AGGTGGGCTCCTCAGAGCGCTGGAGAATTAAAAGCAACTGCAGAAGCACTGAGCTTTACTGAGTGTTCTT
CTACCATTTCAAAAGCACTGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACT
CACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCTTCCGCCAATCAGCAGCTAATCTAGACAATGCT
GACAAGAGGATGGCAGTTATTAAAAGTGTGTTTTCTAGTCGTTCTTTTCTGACCCTGGGTAATAAACAAG
CTAGTATAATTGACTACCTGCCAACTCTTCGGAACATTTGTCGGACAGAAAAGCTAAAAGAACAAGAGAA
AAATAAAAGAAGGTTTCTGCACTATTTTGAAGGAATTCATCTAGAGATTCCTGAAGAAACCATAACTACT
TTGGCAGCTGACTTCCCTTGA

Translation (1826 aa):
MVGVLSMAAAAAPLPVKDYEIEPCKKRRKDDDNSSCETITKYLSPIGKTGDKVFSPPKPSNILHYFRKTS
LTTEKPQSTKAYKIKPSPPLLVGNSKDCKTPLEVFSNREFKRKRKRVSLSSQLNDIKIQDECPVEISNND
SKEDGGLSDCVESSASVSLYKEHVEVLAESIEDSRNQPNTKSSKKKVNPKQCTTKSDDRILRKRKRSKVT
GQSESVPLADELSLPEDGGKDSKLTKPSLAEENDSRTHATKRADLKESTITVSYEEFVKSHKAAKVEEIP
DPAVPACVPSGPGEAVKSGSEGELSGSCEPSPQLHLKTVTVLAQVHPTPPKKKGKIPPIFLKQKQPELEN
SLSDPENEQPVQKRKSNVVIQEGQLELAVLEAWNSEASVPKCSMEERQQFMRAFRQPPPDTLKNGFKKPL
EKQKDPSEKSVHEGDSSSEKIIENPNIQRVSSQGCLQSHADRGSFPKEKSKKPNKKGKKTRTTAGGNREE
NIQKEKTAFSLKDEQDQNSLRRSVRQKSEVLKSNALLNSENLVCEDTAHDSVQMSLCNRNKSRSSSTPTR
DMVTHHRAEPGSSLEYVSTRQPIRRSLRSCSTPATNALGGTESEDAQDTIPVKASTPKSARTSEKHNLYT
AELIIVSSDSESPIRMKFTRISTPKKSKKSSKKSETTEEELTSQKKKANSTSKNISKAKELIEEAKAFQI
GGSKTEETVVPLRRSSRHQARSAKEKSPEIDDSVIVIDSSPTSIREPEKSQKKLQNLNDVLGKKLNKSSK
NVPGKMKIAPLFLAKRTKRAAIPVFDLDESSQDSSEQTQDCDVQFKAKRDFLMSGLPDLLKRQIAKKAAA
LDVYNAVSTSFQRVVHVQQKDDEYWLWHLKPPSCPLLTEFKELNTKVTDLSEYVVAFGEFSTLNPNPRSN
PAAVMMRTRKDFTKEVRNLLLEEIKCSNPEFSLEKYFPLLLKKRIEHQVLCEGHGKQASPQLQPDVSQKE
TKRKQVATGNQKSKRKRQNEYSVSPEEMKGRSKDLDERISSSCTNLDPSRDSGTEDMLWTEKYQPQNSNE
LIGNELAVKKLHSWLKDWKRRAELEERHNLKGKRDEKEEGILDLSDSTDFKGSSDDEENRLCNTVLITGP
TGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNNYNIGKSPK
KLNSPGKVVTSPRKLPPSSPKTSGQKRALLPKTLANYFKVSSKSKSNDDVGALMGDDKGVKNSSLEQRQL
IQTKSTNANNSHIKDVGAEESNRKKATSLILFEEVDVIFDEDAGFLNAVKTFMATTKRPVILTTSDPTFS
LVFDGCFEEINFSIPSLLNVASYLQVICLVENFRTDFKDFVTLLTANACDIRKSILYLQFWIRSGGGILE
ERPLSHCRENSRNTLVCSEDGSDANINSKKPKRNRVALPRCDTGCAEALFGLKNIASPSQDLLSLLKHKI
TTKEEWQKLIQVLTEFHVQNIDLLHSNLEVILPLPVHVVPDVRGAYGFPVTTQASAPASMGHLTRKQSKD
QPLRKSQKRKQKKMVILDDSDLFDTGLDFSGELPSLSPAPSLSVEDNIRRDSNPEIKTQNSGFKPHSVPQ
PPKTLAEKKCCMLVSHCLNSLSEFMENMSFIDALLTDPGEQNELGRSAFHWTNGRVKSGLCDEFSLENRD
RWAPQSAGELKATAEALSFTECSSTISKALESLNSCKQLERDPTNELTVCVSQRRHDACFRQSAANLDNA
DKRMAVIKSVFSSRSFLTLGNKQASIIDYLPTLRNICRTEKLKEQEKNKRRFLHYFEGIHLEIPEETITT
LAADFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH