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Report for CCDS25129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25129.1 Public Mus musculus 11 Rnf135 23 108 98 CCDS HistoryNCBI Gene:71956Re-query CCDS DB by CCDS ID:25129.1Re-query CCDS DB by GeneID:71956See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017839.2 ENSMUSP00000017839.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017839.2Link to Ensembl Protein Viewer:ENSMUSP00000017839.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017839Re-query CCDS DB by Protein ID:ENSMUSP00000017839
Original member Current member NCBI NM_028019.4 NP_082295.1 Accepted alive Link to Nucleotide Sequence:NM_028019.4Link to Protein Sequence:NP_082295.1Re-query CCDS DB by Nucleotide ID:NM_028019Re-query CCDS DB by Protein ID:NP_082295Link to BLAST:NP_082295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082295.1 417 Q9CWS1-1 417 100% 0 0

Chromosomal Locations for CCDS 25129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80183917 80184255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80189224 80189367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80193886 80194048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80196873 80196947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80198561 80199093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGCGGCCGTTTGTTCTGGCAATGCAGTCCCCGTGTGGCTGAGCGAGGACGACCTGAGCTGCATTATCT
GCCAAGGGCTACTAGACCAGCCCACCACGCTGCCCTGTGGCCACAGCTTCTGTCTCCGGTGCCTCCATGA
CCTGTGGGTCTCGAAGCGTGGGGCCGTGGATGGCTGCCCTTGGGCTTGCCCCATATGTCGGAAGGGTCCC
TTGACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGCGC
GGGAGGTCGAGGCTGGCTCGGAGCCTGAACCCGCCCCCGCGCCGCGTTCTGCGCCCCAGGTGACAGTACA
GAAAAGTACCACAAACGTTATCCAGGAGCTGACTGACATGGTGAGACAGCTTGTAGACGATGTCAAGAGC
CTTCAAACGCAAAGACCCAACTTGGGATCTGGACAGGACAATGCACAAGGCACCCCACCCACGGATTCTT
CCTCTGAGGGGGAACATTCCTTGGATTCTCCAAAGCTGGTGACCTTCAGTATATCTCAGAAGAAAATTCA
GGAGATTCTCCATAACCTGGAAGAAATTCAGGAGAAACTGCAAGGGAGTGTCCCAGGGAGAGCGCCCCCT
AGAGAGCGAGTTCAGGAAATGACATCTTCCTTGTGCCTGCTGCCTGACCAGAGGCGTCCTGCACCCAGGA
AAGCTTCTCACTTGTCCCTGTGGGCCATCAGTCCAACCTTTGACCTGAGGACCCTCTCCTATAACCTGGA
GGTTTCCAACAATAGCCGGAGAGTGACTGTGTCTCGTGGTGATCTGCACACCTATCACTGGAGTCCCCAG
AGATTTTCAATTAGCCAGGTCTTTTGTTCTCAGGCCCTCTCTTCTGGACAGAAGTACTGGGAAGTGGACA
CTAGGAACTGTAGCCACTGGGCCATCGGGGTAGCTTCTTGGGGCATGAAGCGGGACGGGATGCTGGGAAG
GACTATGGACTCCTGGTGTATAGAGTGGAGAGGGCCTGGCCAGTTCTCTGCTTGGGCCAAGATGAAGAAA
ACAGACTTGCAGTCGGACCTCCCTGAGGTTGTGGGCGTGTGGCTGGACCTGGAGTCGGGGGAGCTTGCCT
TCTACGCAGTGGCCGATCACGAGAGGCTCCTGTATGAGTGTGAGGTCTCTAGCTCCTCTCCTCTGCATCC
CGCCTTCTGGCTGTATGGCTTAAGTCCTGGAAACTACCTGGAAATAAAGCAGCTAAACACATGA

Translation (417 aa):
MAAVCSGNAVPVWLSEDDLSCIICQGLLDQPTTLPCGHSFCLRCLHDLWVSKRGAVDGCPWACPICRKGP
LTKPKLHKNPLLQDLVDKYLQAAREVEAGSEPEPAPAPRSAPQVTVQKSTTNVIQELTDMVRQLVDDVKS
LQTQRPNLGSGQDNAQGTPPTDSSSEGEHSLDSPKLVTFSISQKKIQEILHNLEEIQEKLQGSVPGRAPP
RERVQEMTSSLCLLPDQRRPAPRKASHLSLWAISPTFDLRTLSYNLEVSNNSRRVTVSRGDLHTYHWSPQ
RFSISQVFCSQALSSGQKYWEVDTRNCSHWAIGVASWGMKRDGMLGRTMDSWCIEWRGPGQFSAWAKMKK
TDLQSDLPEVVGVWLDLESGELAFYAVADHERLLYECEVSSSSPLHPAFWLYGLSPGNYLEIKQLNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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