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Report for CCDS25251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25251.1 Public Mus musculus 11 Wfikkn2 23 108 98 CCDS HistoryNCBI Gene:278507Re-query CCDS DB by CCDS ID:25251.1Re-query CCDS DB by GeneID:278507See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061469.3 ENSMUSP00000053238.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061469.3Link to Ensembl Protein Viewer:ENSMUSP00000053238.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000061469Re-query CCDS DB by Protein ID:ENSMUSP00000053238
Original member Current member NCBI NM_181819.2 NP_861540.2 Accepted alive Link to Nucleotide Sequence:NM_181819.2Link to Protein Sequence:NP_861540.2Re-query CCDS DB by Nucleotide ID:NM_181819Re-query CCDS DB by Protein ID:NP_861540Link to BLAST:NP_861540.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861540.2 571 Q7TQN3 571 100% 0 0

Chromosomal Locations for CCDS 25251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94237598 94239118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94242355 94242549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGTGTGCCCCAGGGTATCATCGGTTCTGGTTTCACTGGGGGCTGCTGTTGCTGCTGCTCCTCGAGGCTC
CCCTTCGAGGCCTAGCACTGCCACCCATCCGATACTCCCATGCGGGCATCTGCCCCAACGACATGAACCC
CAACCTCTGGGTGGATGCCCAGAGCACCTGCAAGCGAGAGTGTGAAACAGACCAGGAATGTGAGACCTAT
GAGAAATGCTGCCCCAATGTGTGTGGGACCAAGAGCTGTGTGGCAGCCCGCTACATGGATGTGAAAGGGA
AGAAGGGCCCTGTGGGCATGCCCAAGGAGGCCACATGTGACCATTTCATGTGCCTGCAGCAGGGCTCTGA
GTGTGACATCTGGGACGGCCAGCCCGTGTGTAAGTGCAAAGATCGCTGTGAGAAGGAGCCCAGCTTCACC
TGTGCCTCTGATGGCCTTACCTACTACAACCGTTGCTTCATGGACGCCGAAGCCTGCTCCAAGGGCATCA
CACTGTCTGTGGTCACCTGTCGTTATCACTTCACCTGGCCTAACACCAGCCCTCCACCGCCTGAGACCAC
GGTGCATCCCACCACCGCCTCTCCGGAGACTCTCGGGCTGGACATGGCAGCCCCGGCCCTGCTCAACCAT
CCTGTCCATCAGTCAGTCACCGTGGGTGAGACTGTGAGTTTCCTCTGTGACGTGGTAGGCCGGCCTCGGC
CAGAGCTCACTTGGGAGAAACAGCTGGAGGACCGAGAGAATGTTGTCATGAGGCCCAACCACGTGCGCGG
TAATGTGGTGGTCACTAACATTGCCCAGCTGGTCATCTACAACGTCCAGCCCCAGGATGCTGGCATATAC
ACCTGTACAGCTCGAAATGTCGCTGGTGTCCTGAGGGCTGACTTCCCGTTGTCGGTGGTCAGGGGTGGTC
AGGCCAGGGCCACTTCAGAGAGCAGTCTCAATGGCACAGCTTTTCCAGCAACAGAGTGCCTGAAGCCCCC
AGACAGTGAGGACTGTGGAGAGGAGCAGACACGCTGGCACTTCGACGCCCAGGCTAACAACTGCCTCACT
TTCACCTTTGGTCACTGCCACCACAATCTCAACCACTTTGAGACCTACGAGGCCTGTATGCTGGCTTGTA
TGAGTGGGCCATTGGCCATCTGCAGCCTGCCTGCCCTGCAAGGGCCTTGCAAAGCTTATGTCCCACGCTG
GGCCTACAACAGCCAGACAGGCCTATGCCAGTCCTTCGTCTATGGCGGCTGTGAGGGCAACGGTAACAAC
TTTGAAAGCCGTGAGGCTTGTGAGGAGTCGTGTCCCTTCCCGAGGGGTAACCAGCACTGCCGGGCCTGCA
AGCCCCGGCAAAAACTTGTTACCAGCTTCTGTCGGAGTGACTTTGTCATCCTGGGCAGGGTCTCTGAGCT
GACCGAAGAGCAAGACTCAGGCCGTGCCCTGGTGACCGTGGATGAGGTCTTAAAAGATGAGAAGATGGGC
CTCAAGTTTCTGGGCCGGGAGCCTCTGGAAGTCACCCTGCTTCATGTAGACTGGACCTGTCCTTGCCCCA
ACGTGACAGTGGGTGAGACACCACTCATCATCATGGGGGAGGTGGACGGCGGCATGGCCATGCTGAGACC
CGATAGCTTTGTGGGGGCATCGAGCACACGGCGGGTCAGGAAGCTCCGTGAGGTCATGTACAAGAAAACC
TGTGACGTCCTCAAGGACTTCCTGGGCTTGCAATGA

Translation (571 aa):
MCAPGYHRFWFHWGLLLLLLLEAPLRGLALPPIRYSHAGICPNDMNPNLWVDAQSTCKRECETDQECETY
EKCCPNVCGTKSCVAARYMDVKGKKGPVGMPKEATCDHFMCLQQGSECDIWDGQPVCKCKDRCEKEPSFT
CASDGLTYYNRCFMDAEACSKGITLSVVTCRYHFTWPNTSPPPPETTVHPTTASPETLGLDMAAPALLNH
PVHQSVTVGETVSFLCDVVGRPRPELTWEKQLEDRENVVMRPNHVRGNVVVTNIAQLVIYNVQPQDAGIY
TCTARNVAGVLRADFPLSVVRGGQARATSESSLNGTAFPATECLKPPDSEDCGEEQTRWHFDAQANNCLT
FTFGHCHHNLNHFETYEACMLACMSGPLAICSLPALQGPCKAYVPRWAYNSQTGLCQSFVYGGCEGNGNN
FESREACEESCPFPRGNQHCRACKPRQKLVTSFCRSDFVILGRVSELTEEQDSGRALVTVDEVLKDEKMG
LKFLGREPLEVTLLHVDWTCPCPNVTVGETPLIIMGEVDGGMAMLRPDSFVGASSTRRVRKLREVMYKKT
CDVLKDFLGLQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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