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Report for CCDS25274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25274.1 Public Mus musculus 11 Tac4 23 108 98 CCDS HistoryNCBI Gene:93670Re-query CCDS DB by CCDS ID:25274.1Re-query CCDS DB by GeneID:93670See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25274.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021242.4 ENSMUSP00000021242.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021242.4Link to Ensembl Protein Viewer:ENSMUSP00000021242.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021242Re-query CCDS DB by Protein ID:ENSMUSP00000021242
Original member Current member NCBI NM_053093.2 NP_444323.1 Accepted alive Link to Nucleotide Sequence:NM_053093.2Link to Protein Sequence:NP_444323.1Re-query CCDS DB by Nucleotide ID:NM_053093Re-query CCDS DB by Protein ID:NP_444323Link to BLAST:NP_444323.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444323.1 128 Q99N14 128 100% 0 0

Chromosomal Locations for CCDS 25274.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95261700 95261819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95265215 95265308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95267369 95267428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95268460 95268572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGTTGCCTCTCCTTGCCCTGCTTCTCCTGATCGGGCCATCAGTGTGCACTACAGCAGGAGACAGAGAGG
AACTGGCTTTTGGTGCAGAGGCAGAGTCCTGGGTGACCGTGAACCTGAAGGGAATCCCCGTCCCCAGCAT
TGAACTTAAGCTTCAGGAGTTGAAGAGAAGCAGGACTCGCCAGTTCTATGGTCTGATGGGGAAGCGGGTG
GGAGGGTATCAGCTGGGACGTATAGTGCAGGATCTCCTTGGCACGAGAGGTTTGTCCATAGAAGGGACCT
GCAGACAGGCGGCGAGTCAACAGAGGGCACGACCCGGAGCAGTGACCAGAGAAAGCCTCCAGAGTCGAGA
GGAAGATGAGGCTCCCCTAACCACCAGCAACGTGTAG

Translation (128 aa):
MLPLLALLLLIGPSVCTTAGDREELAFGAEAESWVTVNLKGIPVPSIELKLQELKRSRTRQFYGLMGKRV
GGYQLGRIVQDLLGTRGLSIEGTCRQAASQQRARPGAVTRESLQSREEDEAPLTTSNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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