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Report for CCDS25285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25285.1 Public Mus musculus 11 B4galnt2 23 108 98 CCDS HistoryNCBI Gene:14422Re-query CCDS DB by CCDS ID:25285.1Re-query CCDS DB by GeneID:14422See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038343.6 ENSMUSP00000037239.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038343.6Link to Ensembl Protein Viewer:ENSMUSP00000037239.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038343Re-query CCDS DB by Protein ID:ENSMUSP00000037239
Original member Current member NCBI NM_008081.3 NP_032107.1 Accepted alive Link to Nucleotide Sequence:NM_008081.3Link to Protein Sequence:NP_032107.1Re-query CCDS DB by Nucleotide ID:NM_008081Re-query CCDS DB by Protein ID:NP_032107Link to BLAST:NP_032107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032107.1 510 Q09199 510 100% 0 0

Chromosomal Locations for CCDS 25285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95866071 95866276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95866750 95866969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95868350 95868490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95869234 95869421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95873862 95873948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95876098 95876278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95883943 95883980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95888807 95888913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95890973 95891110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95891758 95891973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95914820 95914830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGACTTCCAGCGTGTCTTTTGCCAGCTTCAGGTTTCCATGGCTCCTCAAGACATTTGTCCTCATGGTAG
GACTTGCCACTGTTGCGTTTATGGTGAGAAAGGTGTCCCTTACAACAGACTTCAGCACCTTCAAGCCAAA
GTTTCCAGAGCCTGCAAGGGTTGACCCAGTGCTGAAGCTTCTACCAGAGGAGCATCTGAGGAAACTCTTT
ACCTACAGTGACATCTGGCTCTTCCCCAAAAATCAGTGTGACTGTAACTCTGGCAAACTGCGAATGAAAT
ATAAGTTTCAGGATGCCTATAACCAGAAGGACCTTCCAGCTGTGAATGCCAGAAGACAGGCAGAATTTGA
GCACTTTCAGAGGAGAGAAGGGCTGCCTCGCCCACCACCTCTGCTGGCTCCACCCAATCTCCCCTTCGGA
TACCCAGTCCATGGTGTGGAGGTGATGCCCCTGCATACAATTCTCATCCCAGGCCTCCAGTATGAAGGGC
CAGATGCTCCAGTCTATGAGGTCATCCTGAAAGCTTCTCTGGGGACACTGAACACCCTTGCTGATGTGCC
AGATGATGAGGTTCAGGGCAGAGGCCAGAGGCAGCTGACCATTTCCACCAGACATCGGAAGGTCCTGAAT
TTCATCCTTCAGCATGTGACGTACACCAGCACAGAGTACTATCTCCACAAGGTGGACACAGTAAGTATGG
AATACGAGTCGTCAGTGGCCAAGTTTCCAGTGACTATCAAACAACAGACTGTACCCAAGTTGTATGACCC
TGGACCTGAGAGGAAGATCAGAAACCTGGTGACCATTGCCACGAAGACTTTTCTCCGTCCCCACAAGCTT
AAGATCCTGCTTCAGAGTATTCGAAAATATTACCCAGACATCACCGTGATTGTAGCTGATGACAGCAAGG
AGCCCCTGGAAATTAATGATGACTACGTGGAGTACTACACCATGCCCTTTGGGAAGGGCTGGTTTGCTGG
GAGGAACCTGGCCATCTCACAGGTGACTACTAAATATGTCCTCTGGGTGGACGATGACTTTCTCTTCAGC
GACAAGACCAAGATTGAGGTACTGGTGGATGTCCTGGAGAAAACCGAACTGGATGTGGTGGGTGGCAGCG
TGCAGGGGAATACTTACCAGTTCAGGCTGCTGTATGAACAGACCAAGAATGGGAGCTGTCTTCACCAGAG
GTGGGGATCATTCCAGGCCCTTGACGGCTTTCCCGGATGCACGTTGACCAGCGGCGTGGTGAACTTCTTC
TTGGCTCACACGGAACAACTCCGAAGAGTTGGTTTTGATCCCATCTTGCAACGAGTGGCCCACGGAGAGT
TCTTTATTGATGGGCTGGGGAGACTGTTGGTGGGCTCTTGCCCGGGTGTAATTATAAACCACCAAGTAAG
AACACCACCAAAGGATCCAAAGCTGGCTGCCTTGGAGAAGACTTATGACAAATACCGGGCCAACACCAAT
TCTGTGATCCAATTCAAGGTTGCACTCCAGTACTTCAAGAACCATCTCTACTGCTCCACTTAA

Translation (510 aa):
MTSSVSFASFRFPWLLKTFVLMVGLATVAFMVRKVSLTTDFSTFKPKFPEPARVDPVLKLLPEEHLRKLF
TYSDIWLFPKNQCDCNSGKLRMKYKFQDAYNQKDLPAVNARRQAEFEHFQRREGLPRPPPLLAPPNLPFG
YPVHGVEVMPLHTILIPGLQYEGPDAPVYEVILKASLGTLNTLADVPDDEVQGRGQRQLTISTRHRKVLN
FILQHVTYTSTEYYLHKVDTVSMEYESSVAKFPVTIKQQTVPKLYDPGPERKIRNLVTIATKTFLRPHKL
KILLQSIRKYYPDITVIVADDSKEPLEINDDYVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFS
DKTKIEVLVDVLEKTELDVVGGSVQGNTYQFRLLYEQTKNGSCLHQRWGSFQALDGFPGCTLTSGVVNFF
LAHTEQLRRVGFDPILQRVAHGEFFIDGLGRLLVGSCPGVIINHQVRTPPKDPKLAALEKTYDKYRANTN
SVIQFKVALQYFKNHLYCST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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