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Report for CCDS25304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25304.1 Public Mus musculus 11 Nfe2l1 23 108 98 CCDS HistoryNCBI Gene:18023Re-query CCDS DB by CCDS ID:25304.1Re-query CCDS DB by GeneID:18023See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081775.11 ENSMUSP00000080467.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081775.11Link to Ensembl Protein Viewer:ENSMUSP00000080467.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081775Re-query CCDS DB by Protein ID:ENSMUSP00000080467
Original member Current member EBI ENSMUST00000107657.7 ENSMUSP00000103284.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107657.7Link to Ensembl Protein Viewer:ENSMUSP00000103284.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107657Re-query CCDS DB by Protein ID:ENSMUSP00000103284
Original member Current member EBI ENSMUST00000107658.7 ENSMUSP00000103285.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107658.7Link to Ensembl Protein Viewer:ENSMUSP00000103285.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107658Re-query CCDS DB by Protein ID:ENSMUSP00000103285
Original member Current member EBI ENSMUST00000167149.7 ENSMUSP00000128527.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167149.7Link to Ensembl Protein Viewer:ENSMUSP00000128527.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167149Re-query CCDS DB by Protein ID:ENSMUSP00000128527
Original member Current member NCBI NM_001130450.1 NP_001123922.1 Accepted alive Link to Nucleotide Sequence:NM_001130450.1Link to Protein Sequence:NP_001123922.1Re-query CCDS DB by Nucleotide ID:NM_001130450Re-query CCDS DB by Protein ID:NP_001123922Link to BLAST:NP_001123922.1
Original member Current member NCBI NM_008686.3 NP_032712.2 Accepted alive Link to Nucleotide Sequence:NM_008686.3Link to Protein Sequence:NP_032712.2Re-query CCDS DB by Nucleotide ID:NM_008686Re-query CCDS DB by Protein ID:NP_032712Link to BLAST:NP_032712.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123922.1 741 Q61985-1 741 100% 0 0
NP_032712.2 741 Q61985-1 741 100% 0 0

Chromosomal Locations for CCDS 25304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96819176 96820516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96821251 96821409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96822104 96822319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96827198 96827707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGCTTTCTCTGAAGAAATATTTAACGGAAGGACTTCTCCAGTTCACCATCCTGCTGAGTCTGATTGGGG
TTCGGGTGGACGTGGATACTTACCTGACCTCACAGCTCCCCCCTCTCCGGGAGATCATCCTGGGGCCCAG
CTCTGCCTATACCCAGACCCAGTTCCACAACCTGAGGAATACCTTGGATGGCTATGGGATCCACCCCAAG
AGCATAGACCTGGACAATTACTTCACTGCCCGGCGGCTCCTTAGTCAGGTGAGGGCCCTGGATAGGTTCC
AGGTGCCTACCACTGAGGTCAATGCTTGGCTGGTCCACCGAGACCCGGAGGGGTCTGTCTCTGGCAGCCA
GCCCAACTCAGGCCTCGCCCTCGAGAGTTCCAGTGGCCTCCAAGATGTGACAGGCCCAGACAACGGGGTG
AGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTGGAGGACCTGGGGGCTGTAGCCCCTCCTGTCA
GTGGAGACTTAACCAAAGAGGATATAGATCTGATTGACATCCTTTGGCGACAGGATATTGATCTGGGGGC
TGGGCGTGAGGTTTTTGACTACAGTCATCGCCAGAAGGAGCAGGATGTGGATAAGGAACTGCAAGATGGA
CGAGAACGAGAGGACACCTGGTCAGGCGAGGGTGCGGAAGCTCTGGCCCGAGACCTGCTAGTAGATGGAG
AGACTGGGGAGAGCTTCCCTGCACAGTTCCCAGCTGACGTTTCCAGCATCCCAGAAGCAGTGCCTAGTGA
GAGTGAGTCCCCCGCCCTTCAGAACAGCCTTCTATCTCCTCTTCTGACGGGGACAGAATCACCATTTGAT
TTGGAACAGCAGTGGCAAGATCTCATGTCCATCATGGAAATGCAGGCTATGGAAGTAAATACATCAGCAA
GTGAGATTCTGTACAATGCCCCTCCTGGAGACCCTCTTAGCACCAACTACAGCCTTGCACCCAACACTCC
CATCAATCAGAATGTCAGCCTGCATCAGGCGTCCCTGGGGGGCTGCAGTCAGGACTTCTCCCTCTTCAGC
CCCGAGGTGGAGAGCCTGCCTGTGGCTAGCAGCTCCACACTGCTTCCACTCGTCCCCAGCAACTCCACCA
GTCTCAACTCCACCTTTGGCTCTACCAACCTAGCAGGGCTTTTCTTTCCATCCCAGCTCAATGGCACAGC
CAATGACACATCAGGCCCTGAGCTACCTGACCCCCTTGGGGGCCTGTTAGACGAAGCTATGCTGGATGAG
ATCAGCCTGATGGACCTGGCCATTGAGGAGGGCTTCAACCCGGTGCAGGCTTCCCAGCTCGAAGAGGAGT
TTGACTCTGACTCAGGCCTCTCCTTGGACTCCAGCCATAGCCCTTCCTCTCTGAGCAGCTCTGAAGGGAG
CTCTTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTGCTTCCTCCTCTGCCTCTTCTTCCTTCTCTGAGGAG
GGTGCTGTTGGTTACAGCTCTGACTCTGAGACCCTAGACCTAGAAGAGGCTGAGGGTGCAGTGGGCTACC
AGCCGGAATACTCCAAGTTCTGCCGCATGAGCTATCAGGATCCTTCTCAGCTCTCTTGCCTTCCCTACTT
AGAGCATGTGGGCCACAATCATACATACAATATGGCACCCAGTGCCCTTGACTCTGCTGATCTACCACCA
CCCAGCACCCTCAAGAAAGGTAGCAAGGAAAAGCAGGCTGACTTCCTGGACAAGCAGATGAGCCGAGATG
AGCACAGAGCCCGAGCCATGAAGATCCCATTCACCAATGACAAGATCATCAACCTGCCTGTAGAAGAATT
CAATGAGCTGCTGTCCAAATACCAGCTGAGCGAGGCCCAGCTCAGCCTCATCCGGGATATCCGGCGCCGG
GGCAAAAACAAGATGGCTGCACAGAACTGCCGCAAGCGCAAGTTGGACACCATCCTAAACCTAGAACGTG
ATGTGGAGGACTTGCAGCGAGATAAGGCCCGATTGCTTCGAGAAAAGGTAGAGTTCCTTCGGTCTCTGCG
ACAGATGAAGCAGAAGGTCCAAAGCTTATACCAGGAGGTGTTTGGGCGGCTGCGGGATGAGCATGGGAGG
CCCTACTCACCCAGTCAGTATGCCCTTCAGTATGCTGGGGATGGCAGTGTCCTCCTCATTCCTCGCACGA
TGGCTGACCAGCAGGCTCGGCGACAGGAGAGAAAGCCAAAGGACCGGAGGAAGTGA

Translation (741 aa):
MLSLKKYLTEGLLQFTILLSLIGVRVDVDTYLTSQLPPLREIILGPSSAYTQTQFHNLRNTLDGYGIHPK
SIDLDNYFTARRLLSQVRALDRFQVPTTEVNAWLVHRDPEGSVSGSQPNSGLALESSSGLQDVTGPDNGV
RESETEQGFGEDLEDLGAVAPPVSGDLTKEDIDLIDILWRQDIDLGAGREVFDYSHRQKEQDVDKELQDG
REREDTWSGEGAEALARDLLVDGETGESFPAQFPADVSSIPEAVPSESESPALQNSLLSPLLTGTESPFD
LEQQWQDLMSIMEMQAMEVNTSASEILYNAPPGDPLSTNYSLAPNTPINQNVSLHQASLGGCSQDFSLFS
PEVESLPVASSSTLLPLVPSNSTSLNSTFGSTNLAGLFFPSQLNGTANDTSGPELPDPLGGLLDEAMLDE
ISLMDLAIEEGFNPVQASQLEEEFDSDSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSASSSASSSFSEE
GAVGYSSDSETLDLEEAEGAVGYQPEYSKFCRMSYQDPSQLSCLPYLEHVGHNHTYNMAPSALDSADLPP
PSTLKKGSKEKQADFLDKQMSRDEHRARAMKIPFTNDKIINLPVEEFNELLSKYQLSEAQLSLIRDIRRR
GKNKMAAQNCRKRKLDTILNLERDVEDLQRDKARLLREKVEFLRSLRQMKQKVQSLYQEVFGRLRDEHGR
PYSPSQYALQYAGDGSVLLIPRTMADQQARRQERKPKDRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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