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Report for CCDS25626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25626.1 Public Mus musculus 11 Fads6 23 108 98 CCDS HistoryNCBI Gene:328035Re-query CCDS DB by CCDS ID:25626.1Re-query CCDS DB by GeneID:328035See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056153.7 ENSMUSP00000058783.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056153.7Link to Ensembl Protein Viewer:ENSMUSP00000058783.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056153Re-query CCDS DB by Protein ID:ENSMUSP00000058783
Original member NCBI NM_178035.4 NP_828874.3 Updated not alive Link to Nucleotide Sequence:NM_178035.4Link to Protein Sequence:NP_828874.3Re-query CCDS DB by Nucleotide ID:NM_178035Re-query CCDS DB by Protein ID:NP_828874
Current member NCBI NM_178035.5 NP_828874.3 Accepted alive Link to Nucleotide Sequence:NM_178035.5Link to Protein Sequence:NP_828874.3Re-query CCDS DB by Nucleotide ID:NM_178035Re-query CCDS DB by Protein ID:NP_828874Link to BLAST:NP_828874.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_828874.3 342 Q80UG1-1 342 100% 0 0

Chromosomal Locations for CCDS 25626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115283506 115283655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115284200 115284379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115285299 115285486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115286118 115286298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115296538 115296704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115297314 115297476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGAGACCGTTCGTAGTGCGCCTCCGGGGGACGGCGCTGCTGAGGCGCTGCTGAAAGAGCTGGAGCGTC
AGGTGCAGGATGTGGTGCGGGCGAGCTCGTGGTGGGAGCGCCACGGTGTGGACTGCGCCATCCTCGCTCT
CAGCCTGCTCGCCTTGCCGGCAGGGTTCCTGTGCCTACGCGCCCATAATATCCTGGCCTTTGCCACGGGC
ATCACAATCTTGGGTGTGTGCCATTATACACTCACCGTCAAGGGCAGCCACCTGGCCACTCACAGTGCCC
TCACAGAGTCCAAACGCTGGAGCAAGATCTTGATGATTTTCTTTTTGGAGGTGTGCACAGCCTTTTCTGC
AGAGTTCGCCAAATTCAACCACGTGAATCTGCACCACGTTTACACCAACGTGGTGGGTCTGGGCGATTCA
AGCACGTGGAAGGTGCCTCTCCTCAACCGCTACGTTTACATGTTCCTTGGGCCGCTTTTGGTCCCCATCA
TAACGCCGCTGGTAGCTCTTGAGCATTTGAGGAAGGAAGAGCCGAGGACTGCACTGCGGACTTTGGGCTT
CATCTGCCTGGGCCTTTACTCTCAGTACTGGCTGTTCATGAATGTGTCAGGCTTCAAGAACCCCAGTTCA
GCACTGGCCTGCATGCTGCTCACCAGATCCCTGCTGGCCCACCCTTATCTCCATGTCAATATCTTCCAGC
ACATCGGACTGCCTATGTTCTCCCCGGACAAGAAGCCCAGGAGGATCCACATGATGACCCTGGGGGTTCT
GAACCTGCCACGGCAGCTGGTGTTGGACTGGGCATTCGGCCACTCCCTCATCAGCTGCCACGTGGAGCAC
CACCTCTTCCCTTGGCTCTCTGACCACATGTGCTTGAAGGTGAAGCCCTTGGTGTCGAAGTTTCTCCACG
AGAAGCAGCTGCCTTACAATGAAGACTCATACCTGGCTCGATTCCAGCTGTTCCTCAGCCGCTATGAGGA
GTTCATGGTGCATGTCCCGCCCATCACTGAGCTGGTGGGGGTGCAATGA

Translation (342 aa):
METVRSAPPGDGAAEALLKELERQVQDVVRASSWWERHGVDCAILALSLLALPAGFLCLRAHNILAFATG
ITILGVCHYTLTVKGSHLATHSALTESKRWSKILMIFFLEVCTAFSAEFAKFNHVNLHHVYTNVVGLGDS
STWKVPLLNRYVYMFLGPLLVPIITPLVALEHLRKEEPRTALRTLGFICLGLYSQYWLFMNVSGFKNPSS
ALACMLLTRSLLAHPYLHVNIFQHIGLPMFSPDKKPRRIHMMTLGVLNLPRQLVLDWAFGHSLISCHVEH
HLFPWLSDHMCLKVKPLVSKFLHEKQLPYNEDSYLARFQLFLSRYEEFMVHVPPITELVGVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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