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Report for CCDS25637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25637.1 Public Mus musculus 11 Nt5c 23 108 98 CCDS HistoryNCBI Gene:50773Re-query CCDS DB by CCDS ID:25637.1Re-query CCDS DB by GeneID:50773See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021082.6 ENSMUSP00000021082.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021082.6Link to Ensembl Protein Viewer:ENSMUSP00000021082.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021082Re-query CCDS DB by Protein ID:ENSMUSP00000021082
Original member NCBI NM_015807.1 NP_056622.1 Updated not alive Link to Nucleotide Sequence:NM_015807.1Link to Protein Sequence:NP_056622.1Re-query CCDS DB by Nucleotide ID:NM_015807Re-query CCDS DB by Protein ID:NP_056622
Current member NCBI NM_015807.2 NP_056622.1 Accepted alive Link to Nucleotide Sequence:NM_015807.2Link to Protein Sequence:NP_056622.1Re-query CCDS DB by Nucleotide ID:NM_015807Re-query CCDS DB by Protein ID:NP_056622Link to BLAST:NP_056622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056622.1 200 Q9JM14 200 100% 0 0

Chromosomal Locations for CCDS 25637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115490599 115490744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115490853 115490967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115491138 115491198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115491271 115491371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115491607 115491786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGCGGTGAAGCGGCCCGTGCGCGTGCTGGTGGACATGGACGGCGTGCTAGCTGATTTCGAGTCCGGCC
TCCTGCAGGGTTTTCGCCGCCGCTTTCCCGAGGAACCGCACGTGCCGCTGGAACAGCGCCGGGGCTTCCT
CGCCAACGAGCAGTACGGAGCTCTGAGGCCGGACCTGGCGGAAAAAGTGGCCAGTGTGTATGAATCTCCA
GGCTTTTTCCTAAACTTGGAGCCCATCCCTGGGGCCTTGGACGCTTTGCGAGAGATGAACGACATGAAAG
ACACCGAGGTCTTCATCTGCACCACCCCACTGCTGAAGTACGACCACTGTGTGGGCGAGAAGTACCGCTG
GGTGGAGCAGAACCTGGGGCCAGAGTTTGTGGAGCGGATTATCTTGACTAGGGACAAGACGGTGGTCATG
GGAGACCTGCTCATTGATGACAAAGACAACATTCAAGGCCTAGAGGAGACCCCAAGCTGGGAGCACATCT
TGTTCACCTGCTGCCACAATCAGCACCTGGCCCTGCCCCCCACCAGGAGACGGCTGCTTTCCTGGAGTGA
CAACTGGAGGGGGATCATTGAGAGCAAGCGAGCCAGCCTGTGA

Translation (200 aa):
MAVKRPVRVLVDMDGVLADFESGLLQGFRRRFPEEPHVPLEQRRGFLANEQYGALRPDLAEKVASVYESP
GFFLNLEPIPGALDALREMNDMKDTEVFICTTPLLKYDHCVGEKYRWVEQNLGPEFVERIILTRDKTVVM
GDLLIDDKDNIQGLEETPSWEHILFTCCHNQHLALPPTRRRLLSWSDNWRGIIESKRASL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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