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Report for CCDS25683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25683.1 Public Mus musculus 11 Sec14l1 23 108 98 CCDS HistoryNCBI Gene:74136Re-query CCDS DB by CCDS ID:25683.1Re-query CCDS DB by GeneID:74136See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021177.14 ENSMUSP00000021177.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021177.14Link to Ensembl Protein Viewer:ENSMUSP00000021177.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021177Re-query CCDS DB by Protein ID:ENSMUSP00000021177
Original member Current member NCBI NM_028777.4 NP_083053.2 Accepted alive Link to Nucleotide Sequence:NM_028777.4Link to Protein Sequence:NP_083053.2Re-query CCDS DB by Nucleotide ID:NM_028777Re-query CCDS DB by Protein ID:NP_083053Link to BLAST:NP_083053.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083053.2 719 A8Y5H7-3 719 100% 0 0

Chromosomal Locations for CCDS 25683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117117190 117117252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117141418 117141567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117141662 117141793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117143287 117143415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117143781 117144015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117144849 117144958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117147108 117147297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117148535 117148623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117149146 117149216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117150159 117150330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117150604 117150738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117153144 117153278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117155220 117155471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117156361 117156539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117156801 117156902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117158754 117158769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGGTGCAAAAATACCAGTCCCCAGTGCGGGTGTATAAACATCCCTTTGAGTTAATTATGGCTGCCTATG
AGAGGAGGTTTCCTACATGTCCTCTGATTCCAATGTTCGTGGACAGTGACACTGTGAGCGAGTTCAAGAG
TGAGGATGGGGCTCTTCATGTCATCGAGAGGCGCTGCAAGCTGGATATAGATGCGCCCAGGCTGTTGAAG
AAGATCGCAGGAGTCGATTACGTTTATTTTGTCCAGAAAAACTCCCTGAATTCTCGAGATCGCACTTTGC
ACATCGAGGCCCACAATGAGACATTTTCTAACCGGGTCATCATCCACGAACACTGCTGTTACACGGTTCA
CCCTGAGAATGAAGACTGGACCTGTTTCGAACAGTCTGCAAGTTTAGATATCAAATCCTTCTTTGGTTTT
GAAAGTACAGTGGAAAAAATTGCCATGAAACATTATACAAGCAACATTAAAAAAGGGAAGGAGATCATTG
AATACTACCTACGGCAGCTGGAGGAGGAAGGCATCACCTTCGTGCCCCGCTGGACCCCACCCCCCGTGGG
ACCCTCAGAAACATGTTCATCAAGCAAGAATCAAGTCACATCTGCAGCTGTCCTTGTCCCAGATGCTGCT
GCCGTCATGGAGGGGCTGAGTGGGGAAAACCTCAGTAGCCCAGGAACAGCGTCTGAGCCCGTGGTGGGAA
CCCCTGACGATAAATTAGATGCCGACTACATCAAGAGATACTTGGGTGACCTGACTCCCCTCCAAGAGAG
CTGCCTCATTCGACTGCGCCAGTGGCTCCAGGAGACACACAAGGGCAAGATCCCAAAGGACGAGCATATC
CTTCGGTTCCTGCGTGCCCGGGATTTTAATATTGACAAGGCCAGAGAGATCATGTGCCAGTCTCTAACCT
GGCGGAAGCAGCACCAGGTGGATTACATCCTGGACACTTGGACTCCGCCCCAGGTCCTTCTGGACTACTA
CGCTGGGGGCTGGCATCACCATGACAAAGATGGACGGCCGCTGTATGTGCTTAGGCTGGGCCAGATGGAC
ACCAAAGGCTTGGTGCGAGCTCTCGGAGAGGAGGCCCTACTGCGATACGTTCTTTCCATAAACGAAGAAG
GCCTGAGACGATGCGAGGAAAACACCAAGGTCTTCGGCCGGCCAATCAGCTCGTGGACCTGCTTGGTGGA
CCTTGAAGGACTGAACATGCGCCATCTGTGGAGACCAGGGGTCAAAGCCTTGCTGCGCATCATCGAGGTG
GTGGAGGCCAACTACCCGGAGACGCTGGGCCGCCTCCTCATCCTCCGAGCCCCCAGGGTCTTCCCTGTCC
TCTGGACGCTGGTTAGTCCATTTATTGATGACAACACCAGAAGGAAGTTCCTCATTTATGCAGGAAATGA
CTACCAGGGCCCAGGAGGCCTGCTGGATTACATCGATAAAGAGATTATTCCCGATTTCCTGAGTGGGGAG
TGCATGTGTGACGTGCCAGAGGGTGGATTGGTCCCCAAATCCTTGTACAGGACTGCAGAGGAGCTGGAAA
ATGAAGACCTGAAGCTCTGGACGGAGACCATCTACCAGTCTGCCAGCGTGTTCAAAGGAGCTCCACATGA
GATTCTCATTCAGATTGTGGACGCCTCCTCAGTGATCACCTGGGATTTTGATGTGTGCAAAGGGGACATC
GTCTTTAACATTTATCACTCCAAGAGGTCTCCCCAGCCACCCAAGAAGGACTCGCTAGGGGCTCACAGCA
TCACTTCCCCAGGAGGCAACAACGTGCAGCTGATAGACAAAGTCTGGCAGCTGGGCCGGGACTATAGCAT
GGTGGAGTCTCCTCTAATCTGCAAAGAAGGAGAGAGCGTGCAGGGGTCCCATGTGACCAGGTGGCCAGGC
TTCTACATCCTACAGTGGAAATTCCACACCATGCCAGCATGTGCTGCCACCAACCTACCCCGAGTGGACG
ACGTGCTGGCCTCCCTGCAGGTCTCCTCCCACAAGTGCAAAGTCATGTACTACACAGAAGTGATCGGCTC
TGAAGATTTCAGAGGCTCCATGACCAGCCTGGAATCTAGCCACAGCGGGTTCTCACAGCTCAGTGCCGCC
ACCACCTCCTCCAGCCAGTCGCAATCCAGCTCCATGATTTCCAGATGGCGATTTTGCTGA

Translation (719 aa):
MVQKYQSPVRVYKHPFELIMAAYERRFPTCPLIPMFVDSDTVSEFKSEDGALHVIERRCKLDIDAPRLLK
KIAGVDYVYFVQKNSLNSRDRTLHIEAHNETFSNRVIIHEHCCYTVHPENEDWTCFEQSASLDIKSFFGF
ESTVEKIAMKHYTSNIKKGKEIIEYYLRQLEEEGITFVPRWTPPPVGPSETCSSSKNQVTSAAVLVPDAA
AVMEGLSGENLSSPGTASEPVVGTPDDKLDADYIKRYLGDLTPLQESCLIRLRQWLQETHKGKIPKDEHI
LRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILDTWTPPQVLLDYYAGGWHHHDKDGRPLYVLRLGQMD
TKGLVRALGEEALLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEV
VEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGE
CMCDVPEGGLVPKSLYRTAEELENEDLKLWTETIYQSASVFKGAPHEILIQIVDASSVITWDFDVCKGDI
VFNIYHSKRSPQPPKKDSLGAHSITSPGGNNVQLIDKVWQLGRDYSMVESPLICKEGESVQGSHVTRWPG
FYILQWKFHTMPACAATNLPRVDDVLASLQVSSHKCKVMYYTEVIGSEDFRGSMTSLESSHSGFSQLSAA
TTSSSQSQSSSMISRWRFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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