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Report for CCDS25728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25728.1 Public Mus musculus 11 Slc38a10 23 108 98 CCDS HistoryNCBI Gene:72055Re-query CCDS DB by CCDS ID:25728.1Re-query CCDS DB by GeneID:72055See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103018.10 ENSMUSP00000099307.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103018.10Link to Ensembl Protein Viewer:ENSMUSP00000099307.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103018Re-query CCDS DB by Protein ID:ENSMUSP00000099307
Original member Current member NCBI NM_024249.5 NP_077211.4 Accepted alive Link to Nucleotide Sequence:NM_024249.5Link to Protein Sequence:NP_077211.4Re-query CCDS DB by Nucleotide ID:NM_024249Re-query CCDS DB by Protein ID:NP_077211Link to BLAST:NP_077211.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077211.4 1090 Q5I012-1 1090 100% 0 0

Chromosomal Locations for CCDS 25728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120104997 120106036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120106434 120106610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120108467 120108490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120109432 120109536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120110066 120110536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120110838 120111005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120116865 120117021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120128423 120128529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120129201 120129312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120132677 120132859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120134780 120134882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120137857 120137981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120138986 120139129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120140593 120140686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120141600 120141645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120147721 120147838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120150980 120151078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3273 nt):
ATGACGGCCGCCTCCACCTCCAAGTGGGGGCTGATCACGAACGTGGTGAACAGCATCGTGGGCGTCAGCG
TGCTCACCATGCCTTTCTGCTTCAAGCAGTGTGGCATTGTCCTGGGGGCCCTGCTCCTGGTCTTCTGCTC
CTGGATGACACACCAGTCTTGCATGTTCTTGGTGAAGTCGGCCAGCCTGAGCAAGAGGAGGACCTATGCT
GGCCTGGCGTTCCACGCCTACGGCAAGGCCGGGAAGATGCTGGTGGAGACCAGCATGATTGGGCTGATGC
TGGGATCCTGCATTACCTTCTATGTCGTGATCGGTGACTTGGGGTCCAACTTCTTTGCTCCGCTGCTTGG
ATTACAGGTGACCAGGACTGTCCGTGTGTTCCTGCTCTTCGCAGTGTCCCTGTTCATTGTGCTCCCGCTC
AGCCTGCAGAGAAACATGATGGCCTCTATCCAGTCCTTCAGTGCCATGGCGCTCCTCTTCTACACCGTCT
TCATGTTCGTGATTGTGCTGTCCTCCCTTAAACATGGCCTCTTTAGTGGGCAGTGGCTGCGACAGGTCAG
CTACATTCGCTGGGAAGGTGTTTTCCGCTGTGTCCCCATCTTTGGCATGTCCTTTGCCTGTCAGTCCCAG
GTCCTGCCCACCTATGACAGCCTGGACGAGCCATCAGTGAAGACCATGAGCTCCATCTTTGCCTCCTCCC
TCAACGTGGTCACCGCCTTCTATGTCATGGTGGGGTTTTTTGGTTACGTCAGCTTCACTGATGCCACCAC
AGGCAATGTGCTGATCCACTTCCCCTCCAACCCGGTGACAGAGATGATCCGAGTGGGCTTCGTGATGTCT
GTGGCTGTGGGCTTCCCCATGATGATTCTGCCGTGCAGGCAGGCCTTGAACACACTGCTGTTTGAGCAGC
AGCAAAAAGATGGAACCTTTGCTGCAGGAGGCTACATGCCCCCACTCCGGTTTAAAGTCCTCACCCTCTC
GGTGGTGTTTGGAACCATGGTTGGTGGGGTCATGATCCCCAATGTGGAAACCATCCTTGGCTTCACAGGA
GCAACGATGGGGAGCCTCATCTGCTTTATCTGCCCGGCTCTGATCTATAAGAAAGCCCACAAGAATGCCC
CCTCAGCCCAGGTGGTGCTCTGGGTCGGCCTGGGCATCCTCGTGGTCAGCACACTCACCACCCTCTCTGT
GACCGAAGAAGCTCCTCTGGACTTGACGCAAGAAGCTCGCAGCGGCCACCGAGGAGATGCTGAGGGCGCA
ATGAAGGTGGAGGCAGCTCGGCTATCAGTCCAGGATCCCGTTGTAGTTGTTGCTGAGGATAGCCAAGAGA
AGCTAAAGCCAGCAGAGGACAAAGAGGTACTGGAGCAGGCCCAGATCAAGGGTCCTGTAGATGTGCCTGG
CGGGGAAGCTCCCAAGGAGAAGCAGGAAGCCGCACAGCTGGATCGCCCCGGCCAAGGTATTGCTGTCCCT
ATGGGTGAGGCCCATCGCCATGAGCCTCCCATCCCTCATGATAAAGTGGTGGTGGATGAAGGCCAGGACC
AAGAAGGGCCAGAGGAGAAAAAGCCACCTCCCAGGCTCCCAGATGAAGGAGACCCTGCAGGCAGGGGTCA
AGGGGCACCACCTCTGCCTGAGTCAGAGAAGGAGAAGCAGGAACCTGAGAGAGGAGGGGAAGGAAAGAGA
CCCGGGCAAGTCCTGGCAGTAGGAGAAACTGAACATCCTCAGAAGGTTCCAGAAGCAAATGGCCAGCCAC
CTGTGCAGCCCAGGAAGGAAGATTCCAGGCCAGGAAATAGGGATCCGCAGCCAGCTGCCCAGGCCAGGGA
CTCTGTGGAGCTGAAGGCTCTGGCAGCAGATGACGGCAGGGAGCCTGCACAGAAGGCTGGAGGCGCCCTG
TGGAAGCCCGTGGAGAGTGCTGCTGAGAGCGATGCTGGTGGGAAGGCGGGCCTCCCTGTGCAAAGGCCGG
AGGCTGCAGAGCAGAGGGAGAAGAAGGAGGCTGAGCAACAGGGTGGAGACCAGGCGGGGAGCAAGCTGGA
AGCTGAAATTAAAAAGCTAGTAGCAGAAGCTGGGAGGGCAGAGATGCTGGACCATGCCGTGCTGCTACAG
GTGATCCAAGAGCAGCAGGTGCAGCAGAAGCGCCTCCTGGACCAGCAGGAAAAGCTGCTCGCAGTGATTG
AGGAGCAGCACAAGGAGATCCGGCAGCAGCGACAGGAGGGCGAGGAAGACAAGCCTAAGCCTGCAGACGT
GCAGCCAGAGCCTGGGGTGGCTGTACTCCGAGGACAGGAGGAGGAGGCTGAGCACGCTGGGGAGACACTG
GGAGATGACCCTTCACAGCCTTTGCAACCCGTGCTTGGAGCTCCTAGGGGTCGCCCCGCTCCATCCCAAG
ACATGGGCCAGCACCTCCCAGGGGAAGTCAAGGTGCTGCCAGGCAGAGACCTTGCTGACCTTCCTGCTGG
TGGCTCTGAAACAGAGCCCCAGGGGGCCCCGATTGATCTGAGAGAAGACCCGAAAGCTGCCATCAAGGCG
GCTGGAGCTGGGAAGGAGCTGGTCCCAGGGGACTTGGAAGCAGTGCACAAGGCAGCCCCTCCTGAGGTAC
CCAAGAGTCCAGAGAAGCAGGTTGCCAAGGCAGTTGCCGGGCAGCGCCAAGATGTCTTTGGTGAAGGCTC
CGAAGAAAGGAAAGAAACTGGAAAGGAAGCAATGGCCCCTGGTGCTGATACTCAGAAAGAGGCTGTCCAG
CCCTTGGTAGGAGCAGAAGCTAAGGACACAAAATCCAGGCAGTCGGGACCCACCAAGGCCCCAGTTCAGA
CCCAAGCCAAGTTTCACCCAGAACCCCAGGCCATCTTTGACACAGGTCAGGGTTCTCACCCAGAGGTGAG
AAGTGAGGCCCCCCGAGCGGTTCACATACCTCCTGAGGAGCAGCACAAAGGAAAAGGGGGTGCCGCCATC
CAGGAGGCAAAGCAGAGACCAGATCCTAACTCTGGGCCCAAACTAGCTGTGCCTGCGGGTCAGAAGCCAG
AGAATGCCAAACCCAACCGAGACCTAAAAGTGCAGGCTGGCTCTGACCTGCGGAGGAGACGGCGGGATCT
GGCCTCTCATCCAGAGCAGGAGCTGGCTCCAAAGGATGGCGTCATCATTAGCTTTAACTCCCTCCCTAAT
GTTCAGGTGAACGACCTCCGCAGTGCTCTGGACACCCAGCTCCGCCAGGCTGCAGGGGCTGCGTTGCAAG
TGGTACACAGCCGACAGATTAAACAGTTGTCTGGAGATCTGGAGGAAGCCTGA

Translation (1090 aa):
MTAASTSKWGLITNVVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYA
GLAFHAYGKAGKMLVETSMIGLMLGSCITFYVVIGDLGSNFFAPLLGLQVTRTVRVFLLFAVSLFIVLPL
SLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSGQWLRQVSYIRWEGVFRCVPIFGMSFACQSQ
VLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATTGNVLIHFPSNPVTEMIRVGFVMS
VAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKVLTLSVVFGTMVGGVMIPNVETILGFTG
ATMGSLICFICPALIYKKAHKNAPSAQVVLWVGLGILVVSTLTTLSVTEEAPLDLTQEARSGHRGDAEGA
MKVEAARLSVQDPVVVVAEDSQEKLKPAEDKEVLEQAQIKGPVDVPGGEAPKEKQEAAQLDRPGQGIAVP
MGEAHRHEPPIPHDKVVVDEGQDQEGPEEKKPPPRLPDEGDPAGRGQGAPPLPESEKEKQEPERGGEGKR
PGQVLAVGETEHPQKVPEANGQPPVQPRKEDSRPGNRDPQPAAQARDSVELKALAADDGREPAQKAGGAL
WKPVESAAESDAGGKAGLPVQRPEAAEQREKKEAEQQGGDQAGSKLEAEIKKLVAEAGRAEMLDHAVLLQ
VIQEQQVQQKRLLDQQEKLLAVIEEQHKEIRQQRQEGEEDKPKPADVQPEPGVAVLRGQEEEAEHAGETL
GDDPSQPLQPVLGAPRGRPAPSQDMGQHLPGEVKVLPGRDLADLPAGGSETEPQGAPIDLREDPKAAIKA
AGAGKELVPGDLEAVHKAAPPEVPKSPEKQVAKAVAGQRQDVFGEGSEERKETGKEAMAPGADTQKEAVQ
PLVGAEAKDTKSRQSGPTKAPVQTQAKFHPEPQAIFDTGQGSHPEVRSEAPRAVHIPPEEQHKGKGGAAI
QEAKQRPDPNSGPKLAVPAGQKPENAKPNRDLKVQAGSDLRRRRRDLASHPEQELAPKDGVIISFNSLPN
VQVNDLRSALDTQLRQAAGAALQVVHSRQIKQLSGDLEEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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