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Report for CCDS25845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25845.1 Public Mus musculus 12 Mboat2 23 108 98 CCDS HistoryNCBI Gene:67216Re-query CCDS DB by CCDS ID:25845.1Re-query CCDS DB by GeneID:67216See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110942.10 ENSMUSP00000106567.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110942.10Link to Ensembl Protein Viewer:ENSMUSP00000106567.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110942Re-query CCDS DB by Protein ID:ENSMUSP00000106567
Original member Current member NCBI NM_026037.3 NP_080313.2 Accepted alive Link to Nucleotide Sequence:NM_026037.3Link to Protein Sequence:NP_080313.2Re-query CCDS DB by Nucleotide ID:NM_026037Re-query CCDS DB by Protein ID:NP_080313Link to BLAST:NP_080313.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080313.2 519 Q8R3I2-1 519 100% 0 0

Chromosomal Locations for CCDS 25845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 24831700 24831774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24878191 24878336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24882717 24882794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24924199 24924294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24934567 24934622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24939294 24939348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24946506 24946686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24948188 24948380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24951386 24951489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24954186 24954250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24955277 24955409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24957573 24957724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24958935 24959160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCCACCACCAGCACCACGGGCTCCACCCTGCTGCAGCCCCTCAGCAACGCCGTGCAACTGCCCATCG
ATCAGGTCAACTTTGTAGTGTGCCAGCTCTTTGCCTTGTTAGCAGCCGTTTGGTTTCGAACTTATCTACA
CTCAAGCAAAACTAGCTCTTTTATCAGACACGTAGTTGCTACCCTTTTGGGCCTTTATCTTGCATTTTTT
TGCTTTGGATGGTATGCCTTACACTTTCTTGTACAAAGTGGGATTTCCTACTGCATCATGATCATAGCAG
GAGTGGAGAGCATGCAGCAATGTTGCTTTGTGTTTGCTTTGGGATACCTCTCAGTGTGTCAGATTACTAG
AGTCTATATCTTTGATTATGGACAATATTCTGCTGATTTTTCAGGCCCAATGATGATCATTACGCAGAAG
ATCACTAGTTTGGCTTACGAAATTCACGACGGGATGTTTCGGAAGGATGAAGAACTGACTCCGTCGCAGA
GGGGATTAGCTGTGAGGCGCATGCCAAGTCTCCTGGAGTATGTAAGTTATACCTGCAACTTCATGGGCAT
CCTGGCAGGCCCACTGTGCTCCTACAAAGACTACATTGCCTTCATTGAAGGCAGAGCATCCCACGTGGCA
CAGCCCAGTGAAAATGGAAAAGACGAGCAGCATGGGAAAGCAGATCCATCTCCAAATGCAGCAGTTACGG
AGAAGCTCCTGGTCTGTGGACTCTCCTTATTATTCCACCTGACCATCTCCAACATGCTACCCGTGGAGTA
CAACATCGATGAGCATTTCCAAGCCACTGCGTCGTGGCCGACTAAAGCCACCTATCTGTACGTCTCTCTC
TTGGCTGCCAGACCTAAGTACTATTTTGCATGGACCTTAGCTGACGCCATTAACAATGCTGCGGGCTTCG
GTTTCAGAGGATACGACAAGAATGGAGTGGCTCGCTGGGACTTAATTTCCAACTTGAGAATTCAGCAAAT
AGAGATGTCAACAAGTTTTAAGATGTTTCTTGATAACTGGAATATCCAGACAGCTCTTTGGCTCAAAAGG
GTGTGCTATGAACGAGCAACCTTCAGTCCGACAATCCAGACATTCTTTCTCTCTGCCATTTGGCATGGGG
TCTACCCAGGATACTATCTGACATTCCTAACGGGAGTGCTAATGACGTTAGCAGCTCGGGCTGTGAGAAA
TAACTTTAGGCACTATTTCCTGGAGCCCCCTCAACTTAAGTTATTTTATGACCTCATAACCTGGGTGGCC
ACCCAGATAACAATAAGTTACACAGTTGTTCCGTTTGTGCTCCTCTCCATAAAACCGTCGTTCACGTTTT
ACAGCTCCTGGTATTACTGCCTTCACGTCTGTAGTATCTTGGTGTTGCTGTTGCTGCCTGTGAAAAAGTC
TCAAAGAAGAACGAGCACACAGGAAAATGTTCATCTCTCACAGGCCAAAAAGTTTGACGAAAGGGACAAT
CCTCTGGGACAGAACAGTTTTTCCACGATGAATAACGTTTGCAATCAGAACCGAGACACTGGCTCCAGAC
ACTCGTCACTAACACAGTGA

Translation (519 aa):
MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAVWFRTYLHSSKTSSFIRHVVATLLGLYLAFF
CFGWYALHFLVQSGISYCIMIIAGVESMQQCCFVFALGYLSVCQITRVYIFDYGQYSADFSGPMMIITQK
ITSLAYEIHDGMFRKDEELTPSQRGLAVRRMPSLLEYVSYTCNFMGILAGPLCSYKDYIAFIEGRASHVA
QPSENGKDEQHGKADPSPNAAVTEKLLVCGLSLLFHLTISNMLPVEYNIDEHFQATASWPTKATYLYVSL
LAARPKYYFAWTLADAINNAAGFGFRGYDKNGVARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKR
VCYERATFSPTIQTFFLSAIWHGVYPGYYLTFLTGVLMTLAARAVRNNFRHYFLEPPQLKLFYDLITWVA
TQITISYTVVPFVLLSIKPSFTFYSSWYYCLHVCSILVLLLLPVKKSQRRTSTQENVHLSQAKKFDERDN
PLGQNSFSTMNNVCNQNRDTGSRHSSLTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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