NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26001.1 Public Mus musculus 12 Pals1 23 108 98 CCDS HistoryNCBI Gene:56217Re-query CCDS DB by CCDS ID:26001.1Re-query CCDS DB by GeneID:56217See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082024.6 ENSMUSP00000080683.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082024.6Link to Ensembl Protein Viewer:ENSMUSP00000080683.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000082024Re-query CCDS DB by Protein ID:ENSMUSP00000080683
Original member Current member NCBI NM_019579.3 NP_062525.1 Accepted alive Link to Nucleotide Sequence:NM_019579.3Link to Protein Sequence:NP_062525.1Re-query CCDS DB by Nucleotide ID:NM_019579Re-query CCDS DB by Protein ID:NP_062525Link to BLAST:NP_062525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062525.1 675 Q9JLB2 675 100% 0 0

Chromosomal Locations for CCDS 26001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 78797024 78797390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78809752 78809960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78817241 78817318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78817625 78817771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78819204 78819365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78820808 78820885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78824689 78824872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78825857 78825928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78826261 78826332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78829653 78829820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78830853 78831055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78832365 78832475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78837458 78837634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGACAACATCATATATGAATGGGCATGTAACAGAGGAATCAGACAGCGGAATAAAAAATCTTGATCTTG
CATCACCAGAGGAATATCCGAAGCACCGAGAGATGGCTGTTGACTGCCCTGGAGATTTGGGCACCAGAAT
GATGCCAGTGCGAAGAAGTGCACAGTTAGAGCGGATTCGACAACAACAGGAGGATATGAGACGTAGGCGC
GAAGAGGAAGGGAAAAAGCAAGAACTTGACCTAAATTCTTCCATGAGACTTAAGAAACTAGCTCAAATTC
CTCCAAAGACTGGAATAGATAACCCTATATTTGACACGGAAGAAGGAATTGTTTTAGAAAGTCCTCACTA
TGCTGTGAACATATTAGACGTTGAAGACTTGTTCTCTTCACTTAAACACATCCAACACACTTTGGTTGAT
TCTCAGAGCCAGGAGGATATCTCACTGCTTTTACAGCTTGTACAAAACAGAGATTTTCAGAATGCATTCA
AGATACACAATGCTGTCACAGTACACATGAGCAAGGCCAGCCCTCCGTTTCCTCTTATCGCCAATGTACA
AGACCTTGTACAAGAGGTACAAACTGTCTTAAAGCCAGTCCATCAGAAGGAAGGACAAGAACTAACTGCC
TTGTTGAATGCTCCACATATTCAGGCACTTTTACTGGCCCATGATAAGGTTGCTGAGCAGGAAATGCAGC
TAGAGCCCATTACAGATGAGAGAGTTTATGAAAGTATCGGCCATTACGGGGGAGAAACTGTAAAAATAGT
TCGTATAGAAAAGGCTCGGGATATTCCATTGGGTGCCACAGTTCGTAATGAAATGGATTCTGTCATCATA
AGCCGGATAGTGAAAGGAGGCGCCGCAGAGAAGAGTGGCCTCCTGCACGAAGGAGACGAAGTTCTGGAGA
TCAACGGCATTGAAATCCGGGGCAAGGATGTCAATGAGGTTTTTGACTTGTTGTCTGATATGCATGGTAC
TTTGACATTTGTTCTGATTCCTAGTCAACAGATCAAGCCCCCTCCTGCCAAAGAAACTGTAATCCATGTG
AAAGCTCATTTTGACTATGACCCCTCAGATGACCCTTATGTTCCATGTCGAGAGTTAGGGCTGTCTTTTC
AAAAAGGAGATATACTTCATGTGATCAGTCAAGAAGATCCAAATTGGTGGCAGGCCTATAGAGAGGGAGA
CGAAGATAATCAGCCTCTAGCTGGACTTGTTCCAGGCAAAAGCTTTCAGCAGCAAAGGGAAGCCATGAAG
CAAACTATAGAAGAAGATAAGGAGCCAGAGAAATCAGGAAAACTGTGGTGTGCAAAGAAGAATAAAAAGA
AGAGGAAAAAGGTTTTATATAATGCCAATAAAAATGATGATTATGACAATGAAGAGATCTTAACGTATGA
GGAAATGTCACTTTATCACCAGCCAGCAAATAGGAAAAGACCTATCATCTTGATCGGTCCACAGAACTGT
GGCCAGAATGAACTGCGCCAGAGACTAATGAATAAGGAAAAAGACCGCTTTGCATCTGCCGTTCCTCATA
CAACTCGGAATAGGCGAGACCATGAAGTAGCTGGGAGAGATTACCACTTTGTTTCTCGGCAAGCATTTGA
AGCAGACATAGCAGCTGGCAAGTTCATTGAACATGGTGAATTTGAGAAAAATCTGTATGGAACCAGCATA
GACTCTGTACGACAAGTAATCAACTCTGGCAAGATATGTCTCTTAAGTCTTCGCACACAGTCCTTGAAGA
CCCTCCGGAATTCAGATTTGAAACCATATATCATCTTCATTGCACCACCTTCACAAGAGAGACTTCGGGC
GTTGTTAGCCAAGGAAGGCAAGAACCCAAAGCCTGAAGAATTAAGGGAGATCATTGAGAAGACGAGAGAG
ATGGAGCAGAACAACGGACACTACTTCGACACTGCAATTGTGAATTCAGATCTTGATAAAGCCTATCAGG
AATTGCTTAGGCTCATTAACAAACTGGATACTGAACCTCAGTGGGTGCCATCCACCTGGCTAAGGTGA

Translation (675 aa):
MTTSYMNGHVTEESDSGIKNLDLASPEEYPKHREMAVDCPGDLGTRMMPVRRSAQLERIRQQQEDMRRRR
EEEGKKQELDLNSSMRLKKLAQIPPKTGIDNPIFDTEEGIVLESPHYAVNILDVEDLFSSLKHIQHTLVD
SQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMSKASPPFPLIANVQDLVQEVQTVLKPVHQKEGQELTA
LLNAPHIQALLLAHDKVAEQEMQLEPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMDSVII
SRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQQIKPPPAKETVIHV
KAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMK
QTIEEDKEPEKSGKLWCAKKNKKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNC
GQNELRQRLMNKEKDRFASAVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSI
DSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREIIEKTRE
MEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH