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Report for CCDS26051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26051.1 Public Mus musculus 12 Arel1 23 108 98 CCDS HistoryNCBI Gene:68497Re-query CCDS DB by CCDS ID:26051.1Re-query CCDS DB by GeneID:68497See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043169.13 ENSMUSP00000048780.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043169.13Link to Ensembl Protein Viewer:ENSMUSP00000048780.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043169Re-query CCDS DB by Protein ID:ENSMUSP00000048780
Original member Current member NCBI NM_001364189.1 NP_001351118.1 Accepted alive Link to Nucleotide Sequence:NM_001364189.1Link to Protein Sequence:NP_001351118.1Re-query CCDS DB by Nucleotide ID:NM_001364189Re-query CCDS DB by Protein ID:NP_001351118Link to BLAST:NP_001351118.1
Original member Current member NCBI NM_001364190.1 NP_001351119.1 Accepted alive Link to Nucleotide Sequence:NM_001364190.1Link to Protein Sequence:NP_001351119.1Re-query CCDS DB by Nucleotide ID:NM_001364190Re-query CCDS DB by Protein ID:NP_001351119Link to BLAST:NP_001351119.1
Original member Current member NCBI NM_178065.5 NP_835166.3 Accepted alive Link to Nucleotide Sequence:NM_178065.5Link to Protein Sequence:NP_835166.3Re-query CCDS DB by Nucleotide ID:NM_178065Re-query CCDS DB by Protein ID:NP_835166Link to BLAST:NP_835166.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351118.1 823 Q8CHG5 823 100% 0 0
NP_001351119.1 823 Q8CHG5 823 100% 0 0
NP_835166.3 823 Q8CHG5 823 100% 0 0

Chromosomal Locations for CCDS 26051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84920478 84920580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84920680 84920855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84921258 84921347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84923860 84923918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84923996 84924125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84925694 84925819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84926234 84926413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84927301 84927410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84927869 84927944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84930118 84930239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84930349 84930490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84931699 84931776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84934152 84934399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84934570 84934750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84934954 84935123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84940160 84940397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84941731 84941957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84943332 84943347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGTTTTACGTTATTGGTGGAATCATAGTGTCTGTGGTTGCATTCTTCTTCACAATTAAGTTCCTCTTTG
AGCTTGCCGCACGTGTAGTCAGCTTTCTTCAGAATGAAGACCGTGAGCGCCGAGGGGACCGGACTATTTA
TGACTACGTGCGGGGAAATTACCTGGATCCCCGGTCCTGCAAAGTGTCCTGGGATTGGAAGGACCCCTAT
GAGGTGGGCCACAGCATGGCCTTCCGAGTGCATTTGTTCTATAAGAATGGACAGCCTTTCCCTGCACATC
GGCCCGTGGGACTGCGGGTTCACATCTCTCACGTTGAACTAGCAGTGGACATTCCAGTGACCCAGGAAGT
CCTCCAGGAGCCGAATTCTAACGTGGTGAAGGTGGCCTTCACTGTGCGCAAGGCTGGGCGCTATGAGATC
ACTGTGAAGTTGGGTGGCTTAAATGTGGCCTATAGTCCCTACTACAAAATTTTTCAGCCTGGAATGGTGG
TTCCTTCCAAAACAAAAATTGTGTGCCATTTTTCTACTCTGGTGTTGACGTGTGGGCAGCCACACACTCT
GCAGATAGTGCCCCGAGATGAGTATGACAACCCAACCAACAATTCCATGTCCCTGAGAGATGAGCACAGC
TACAGCTTAGCCATTCACGAGCTTGGTCCTCAAGAAGAAGAGAATAATGAAGTCTCATTTGAGAAGTCAG
TGACGTCCAACAGGCAGACTTGCCAGGTGTTCTTGCGGCTCACCCTGCATTCCCGAGGTTGCTTCCATGC
CTGCATTTCATATCAGAACCAACCCATCAATAATGGCGAATTTGACATTATTGTCCTTAGTGAGAATGAG
AAGAATATTGTTGAACGAAATGTGTCCACCTCAGGAGTGAGCATTTACTTTGAGGCTTACCTTTACAATG
CTAACAACTGTACCAGCACACCATGGCATCTTCCTCCCATGCACATGAGCTCTTCTCAACGCCGGCCCTC
CACTGCTATTGAGGAGGACGATGAAGACTCACCCTCAGAGTGTCACACCCCTGAGAAGGTGAAGAAACCG
AAGAAGGTGTACTGCTATGTGTCACCAAAGCAATTCTCTGTGAAGGAATTCTACCTGAAAATCATCCCCT
GGCGCCTCTACACCTTCCGAGTGTGCCCAGGAACAAAGTTTTCATACCTTGGCCCTGACCCTGTTCACAA
GCTCCTCACGCTGGTGGTGGATGACGGCATTCAGCCTCCAGTGGAGCTCAGCTGTAAAGAAAGGAATATC
CTAGCAGCCACTTTCATCCGTTCCTTGCACAAGAACATTGGAGGCTCTGAGACCTTTCAAGACAAGGTGA
ACTTTTTCCAGAGAGAGCTTCGGCAGGTACATATGAAGAGACCTCATTCCAAAGTCACTCTGAAGGTCAG
CAGACACGCCTTGTTGGAGTCGTCTTTGAAGGCCACTCGGAACTTTTCCATCTCAGACTGGAGCAAGAAC
TTTGAAGTAGTTTTCCAGGATGAGGAAGCTTTGGATTGGGGAGGGCCTCGCCGGGAATGGTTTGAGCTAA
TCTGCAAAGCACTGTTTGACACCACCAGTCAGCTCTTCGCCCGGTTCACTGACAGCAACCAAGCACTAGT
GCATCCTAACCCTAACCGCCCGGCTCACCTGCGCTTGAAGATGTATGAGTTTGCAGGGCGGCTGGTGGGC
AAGTGTTTGTATGAATCCTCTCTAGGGGGAGCCTACAAGCAGTTGGTCCGTGCCCGGTTCACTCGGTCTT
TCCTGGCCCAAATCATAGGACTCCGTATGCATTACAAGTACTTTGAAACGGATGACCCAGAATTCTATAA
GTCCAAGGTGTGCTTTATCCTCAACAATGACATGAGTGAGATGGAGCTGGTCTTTGCAGAAGAGAAATAC
AACAAATCAGGTCAACTGGATAAGATTGTAGAACTCATGACAGGCGGAGCTCAAACCCCAGTCACCAATG
CAAATAAAATCTTCTATTTAAACCTGCTGGCTCAGTATCGGCTGGCCAGTCAAGTGAAAGAGGAGGTGGA
GCATTTCCTGAAAGGCTTGAATGAGCTGGTTCCTGAGAACCTCCTGGCTATTTTTGATGAGAATGAGCTT
GAGCTGCTGATGTGTGGGACTGGAGACATCAATGTATCTGACTTCAAAGCCCATGCTGTAGTGGTTGGTG
GATCCTGGCATTTCAGAGAAAAGGTCATGAGGTGGTTTTGGGCTGTGGTTTCCAGTCTGACCCAGGAGGA
ACTGGCTAGGCTGCTTCAGTTTACAACAGGCTCTTCTCAGCTCCCACCTGGAGGATTTGCTGCCCTCTGT
CCCTCATTTCAGATTATTGCTGCTCCAACCCATAGCACGCTTCCTACTGCACACACATGTTTTAACCAAC
TGTGCCTCCCTACATATGACTCATATGAAGAGGTGCACAGGATGCTACAGCTGGCCATCAGTGAGGGTTG
CGAGGGCTTTGGCATGCTCTGA

Translation (823 aa):
MFYVIGGIIVSVVAFFFTIKFLFELAARVVSFLQNEDRERRGDRTIYDYVRGNYLDPRSCKVSWDWKDPY
EVGHSMAFRVHLFYKNGQPFPAHRPVGLRVHISHVELAVDIPVTQEVLQEPNSNVVKVAFTVRKAGRYEI
TVKLGGLNVAYSPYYKIFQPGMVVPSKTKIVCHFSTLVLTCGQPHTLQIVPRDEYDNPTNNSMSLRDEHS
YSLAIHELGPQEEENNEVSFEKSVTSNRQTCQVFLRLTLHSRGCFHACISYQNQPINNGEFDIIVLSENE
KNIVERNVSTSGVSIYFEAYLYNANNCTSTPWHLPPMHMSSSQRRPSTAIEEDDEDSPSECHTPEKVKKP
KKVYCYVSPKQFSVKEFYLKIIPWRLYTFRVCPGTKFSYLGPDPVHKLLTLVVDDGIQPPVELSCKERNI
LAATFIRSLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFSISDWSKN
FEVVFQDEEALDWGGPRREWFELICKALFDTTSQLFARFTDSNQALVHPNPNRPAHLRLKMYEFAGRLVG
KCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEMELVFAEEKY
NKSGQLDKIVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENEL
ELLMCGTGDINVSDFKAHAVVVGGSWHFREKVMRWFWAVVSSLTQEELARLLQFTTGSSQLPPGGFAALC
PSFQIIAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFGML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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