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Report for CCDS26065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26065.1 Public Mus musculus 12 Gpatch2l 23 108 98 CCDS HistoryNCBI Gene:70373Re-query CCDS DB by CCDS ID:26065.1Re-query CCDS DB by GeneID:70373See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000221368.1 ENSMUSP00000152284.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221368.1Link to Ensembl Protein Viewer:ENSMUSP00000152284.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221368Re-query CCDS DB by Protein ID:ENSMUSP00000152284
Original member Current member NCBI NM_027405.3 NP_081681.2 Accepted alive Link to Nucleotide Sequence:NM_027405.3Link to Protein Sequence:NP_081681.2Re-query CCDS DB by Nucleotide ID:NM_027405Re-query CCDS DB by Protein ID:NP_081681Link to BLAST:NP_081681.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081681.2 482 Q6PE65-1 482 100% 0 0

Chromosomal Locations for CCDS 26065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86244045 86244706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86256868 86256932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86260577 86260753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86261616 86261695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86265182 86265249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86267144 86267183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86268976 86269061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86281449 86281543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86288800 86288975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGATGAGCTAGTGCATGACCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGAGC
TGTGGGAGGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGAAGCG
CCGGTCTGACTTTACTCACCTGGCAGAGCACGCCTGCTGCTTCAGCGAGGCCTCTGAGTCAAGTCTGGAT
GAAGCCACCAAGGACTGCCGAGAAGTGGCTCCGCTCACCAACTTCAGTGACTCTGATGACACGGTGGTGG
CCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCTTGGCCCGAGTCTGACTCCTT
TACGGAAAACGCACCTTGTCGACCCCTCAGGCGCCGGCGGAAGGTGAAGCGAGTGACGTCCGAGGTGGCT
GCCAGCCTTCAGCAGAAGCTGAAAGTGTCAGATTGGAGCTATGAGAGAGGCTGCAGGTTCAAGTCTGCCA
AGAAGCAGCGTCTATCCCGCTGGAAGGAGAATACTCCCTGGACCTCATCTGGCCATGGGCTGTGTGAATC
AGCAGAGAATCGGACTTTCCTAAGCCAACCAGGAAGGAAAGAAAGGATGGAGTGCGAAGCCGAAGAGCAG
AAGCACGGCTCTGACGAGAACATGTCCGAGTGTGACACTAGCAGTGTGTGCAGCAGCAGTGACACGGGGC
TCTTCACCAATGATGAAGGACGACAAGGGGATGATGAGCAGAGTGATTGGTTTTATGAAGGAGAATGTGT
CCCCGGATTCACTGTCCATAACCTTCTGCCCAAGTGGGCTCCTGATCACTGCACTGAAGTAGAAAGGATG
GACTCCGGCCTGGATAAACTCTCAGACCCCACGTTCCTTTTACCTTCCCGGCCAGCTCAAAGAGGATACC
ATGGTCGTCTGAATAGGTTGCCAGGAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAAGGCTGCCTGG
GAAGGAGGCGAGCATGAGCAGCCTGGGGACGGAGAGGATCGGCCATACCATCAGTGACCCCCGGCAGACA
GATTTCTGGTTACCATCAGCTGGGAAAAGAGAACGGAATCAGTTTAATCCACTCTCCCCTCTTTACTCCC
TGGACGTTCTTGCTGATGCTTCTCATCGAAGGTGCTCACCTGCACACTGCTCTGCCAGGCAGGCAAGTGT
ACACTGGGGACCACCATGTCCACGTGACATTAAGAGGAAACGGAAACCTGTGGCCTCAGCATCTTTTTCT
AGCCCTAGTCCAGTGCACCCAGATGTTCTGGAGCCGGCCATCCCAGCTCAGAAGCCTCCTGACTCCGAGT
GGTTGGACGGGACCTCTGCAGCAGAGAAAGCCACTGCCTTTCCTCCAGCCACGTTTTTCAAAATGCCACA
GGAAAAGAATTCTGGCTGCAGCTCTAGCCCAGGAACCAATGGGTGTTGA

Translation (482 aa):
MDELVHDLASALEQTSEQSKLGELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHACCFSEASESSLD
EATKDCREVAPLTNFSDSDDTVVAKRHPALSAIIRGKQHSWPESDSFTENAPCRPLRRRRKVKRVTSEVA
ASLQQKLKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSQPGRKERMECEAEEQ
KHGSDENMSECDTSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGECVPGFTVHNLLPKWAPDHCTEVERM
DSGLDKLSDPTFLLPSRPAQRGYHGRLNRLPGAAARCLRKGRRRLPGKEASMSSLGTERIGHTISDPRQT
DFWLPSAGKRERNQFNPLSPLYSLDVLADASHRRCSPAHCSARQASVHWGPPCPRDIKRKRKPVASASFS
SPSPVHPDVLEPAIPAQKPPDSEWLDGTSAAEKATAFPPATFFKMPQEKNSGCSSSPGTNGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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