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Report for CCDS26087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26087.1 Public Mus musculus 12 Adck1 23 108 98 CCDS HistoryNCBI Gene:72113Re-query CCDS DB by CCDS ID:26087.1Re-query CCDS DB by GeneID:72113See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101165.8 ENSMUSP00000098724.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101165.8Link to Ensembl Protein Viewer:ENSMUSP00000098724.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101165Re-query CCDS DB by Protein ID:ENSMUSP00000098724
Original member Current member EBI ENSMUST00000166940.2 ENSMUSP00000127254.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166940.2Link to Ensembl Protein Viewer:ENSMUSP00000127254.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166940Re-query CCDS DB by Protein ID:ENSMUSP00000127254
Original member Current member EBI ENSMUST00000222695.1 ENSMUSP00000152821.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222695.1Link to Ensembl Protein Viewer:ENSMUSP00000152821.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222695Re-query CCDS DB by Protein ID:ENSMUSP00000152821
Original member Current member NCBI NM_001277296.1 NP_001264225.1 Accepted alive Link to Nucleotide Sequence:NM_001277296.1Link to Protein Sequence:NP_001264225.1Re-query CCDS DB by Nucleotide ID:NM_001277296Re-query CCDS DB by Protein ID:NP_001264225Link to BLAST:NP_001264225.1
Original member Current member NCBI NM_001277297.1 NP_001264226.1 Accepted alive Link to Nucleotide Sequence:NM_001277297.1Link to Protein Sequence:NP_001264226.1Re-query CCDS DB by Nucleotide ID:NM_001277297Re-query CCDS DB by Protein ID:NP_001264226Link to BLAST:NP_001264226.1
Original member Current member NCBI NM_028105.4 NP_082381.1 Accepted alive Link to Nucleotide Sequence:NM_028105.4Link to Protein Sequence:NP_082381.1Re-query CCDS DB by Nucleotide ID:NM_028105Re-query CCDS DB by Protein ID:NP_082381Link to BLAST:NP_082381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264225.1 525 Q9D0L4-1 525 100% 0 0
NP_001264226.1 525 Q9D0L4-1 525 100% 0 0
NP_082381.1 525 Q9D0L4-1 525 100% 0 0

Chromosomal Locations for CCDS 26087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 88368346 88368480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88371695 88371778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88401973 88402176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88431021 88431179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88441083 88441241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88446641 88446757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88455479 88455628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88456737 88456934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88459010 88459203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88461015 88461192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGCCAGAAAGGCTCTCAAGCTTGCTTCATGGACCAGCGTGGCTCTTGCTGCCTCCGGTGTCTACCTCT
ACAGTAACAACTACTTGGACCCTAATGACTTTGGCGCTGTCAGGGTGGGCAGAGCTGTTGCTACGACAGC
TGTCATCAGCTATGACTACCTCACCTCCCTGAGGAGTGTCCCATATGGCTCTGAGGAGTATTTGCAGCGT
CGATCCCAGGTGCACCTCCGCTCTGCCAGGCGTCTCTTTGAGCTCTGCTGTGCCAACCGGGGCACTTTCA
TCAAGGTGGGCCAGCACCTGGGGGCGCTGGACTACCTGCTGCCAGAAGAGTACACCAGCACACTGAAGGT
GTTGCACAGTCAAGCCCCACAGAGCAGCATGCAAGAGGTCCGGCAGGTCATCCGAGAAGACCTGGGCAAG
GAGATCCACGATTTGTTCCTGAGCTTCGATGACACCCCTCTTGGGGCAGCCTCCCTGGCCCAGGTCCACA
AGGCGGTGTTGCATGATGGTCGGACAGTGGCAGTTAAGGTCCAGCACCCGAAGGTTCAGGCTCAAAGCTC
TAAGGACATTCTCCTGATGGAGGTGCTTGTCCTGGCCGTGAAGCAACTTTTCCCAGATTTTGAATTCATG
TGGCTGGTGGATGAAGCGAAGAAGAACCTGCCTCTCGAGTTGGACTTCCTGAATGAAGGGAGGAACGCTG
AGAAAGTGGCCCACATGCTCAGGCACTTTGACTTCCTAAAGGTTCCCCAGATCCACTGGGAGCTGTCTAC
CAAGAGGGTGCTCCTGATGGAATTTGTAGAGGGAGGTCAAGTCAACGACAGGGCCTACATGGAGAAGAAC
CAGATCGATGTGAATGAGATCTCCTGCCACCTGGGCAAGATGTACAGTGAGATGATCTTTGTCAATGGCT
TCGTGCACTGTGACCCCCACCCAGGCAACGTACTGGTACGGAAGCGTCCTGACACGGGCAAGGCTGAGAT
TGTCCTCTTAGACCATGGGCTTTACCAGGTGCTCACGGAGGAGTTCCGCCTGGACTACTGCCATCTGTGG
CAGTCTCTGATCTGGACTGACATGGACGGGCTGAAACAGTACAGCCAGCGCCTGGGAGCTGCAGACCTCT
ACCCACTGTTTGCCTGTATGCTGACAGCCCGGTCCTGGGACTCAGTCAAACAGGGCATTGGGCAAGCTCC
AGTCTCTGCTACTGAGGACTCAGAGATTCGCAATAATGCAGCCTGCTACCTGCCTGAGATCAGCCAGCTC
CTTAACCATGTGCCTCGCCAGATGCTGCTCATCCTGAAGACTAATGATCTACTCCGTAGCATTGAGACCA
CCCTGGGCACGCGCTCCAGTGCCAGTTCCTTCCTCAACATGTCTCGGTGTTGTATCAGGGCGCTGGCTGA
ACACAAGAAGAGGGATGCCGGCTCTTTCTTCAGAAGGACTCAGATATCTTTCAGTGAGGCCTTTAGCCTG
TGGCAGATCAACCTTCATGAACTTCTGCTTCGAGTGAGGGCCTTGAGGCTAGCTTGCTGGGTCTCAGCTC
TCCTGGGCTGGCTGACTCGGGCTCCACACAGAATGTGA

Translation (525 aa):
MARKALKLASWTSVALAASGVYLYSNNYLDPNDFGAVRVGRAVATTAVISYDYLTSLRSVPYGSEEYLQR
RSQVHLRSARRLFELCCANRGTFIKVGQHLGALDYLLPEEYTSTLKVLHSQAPQSSMQEVRQVIREDLGK
EIHDLFLSFDDTPLGAASLAQVHKAVLHDGRTVAVKVQHPKVQAQSSKDILLMEVLVLAVKQLFPDFEFM
WLVDEAKKNLPLELDFLNEGRNAEKVAHMLRHFDFLKVPQIHWELSTKRVLLMEFVEGGQVNDRAYMEKN
QIDVNEISCHLGKMYSEMIFVNGFVHCDPHPGNVLVRKRPDTGKAEIVLLDHGLYQVLTEEFRLDYCHLW
QSLIWTDMDGLKQYSQRLGAADLYPLFACMLTARSWDSVKQGIGQAPVSATEDSEIRNNAACYLPEISQL
LNHVPRQMLLILKTNDLLRSIETTLGTRSSASSFLNMSRCCIRALAEHKKRDAGSFFRRTQISFSEAFSL
WQINLHELLLRVRALRLACWVSALLGWLTRAPHRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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