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Report for CCDS26104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26104.1 Public Mus musculus 12 Efcab11 23 108 98 CCDS HistoryNCBI Gene:78767Re-query CCDS DB by CCDS ID:26104.1Re-query CCDS DB by GeneID:78767See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046485.4 ENSMUSP00000044808.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046485.4Link to Ensembl Protein Viewer:ENSMUSP00000044808.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000046485Re-query CCDS DB by Protein ID:ENSMUSP00000044808
Original member Current member EBI ENSMUST00000223114.1 ENSMUSP00000152734.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223114.1Link to Ensembl Protein Viewer:ENSMUSP00000152734.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223114Re-query CCDS DB by Protein ID:ENSMUSP00000152734
Original member Current member NCBI NM_030172.2 NP_084448.1 Accepted alive Link to Nucleotide Sequence:NM_030172.2Link to Protein Sequence:NP_084448.1Re-query CCDS DB by Nucleotide ID:NM_030172Re-query CCDS DB by Protein ID:NP_084448Link to BLAST:NP_084448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084448.1 162 Q9D0E5-1 162 100% 0 0

Chromosomal Locations for CCDS 26104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 99719025 99719103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99854610 99854700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99855538 99855639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99878357 99878402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99882762 99882857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99883282 99883356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGTTCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCGAAGCCAGCGCCTCAGAACGCAGGAAATGGG
TGAAAGTATTTAAAGCATGCGATGAAGACAACAAAGGCTACCTAAGCCGAGAGGACTTTAAGGTTGCGAT
TGTAATGCTGTTTGGGTACAAACCCTCCAAGATAGAAGCGGATGCTGTGATGTCTTCAGTAAATCCCAAC
ACTTCTGGTGTTTCACTTGAGGGGTTTTTGAGTGCCGTAAAGAGAAAGAAGGAAGCGCGACTCTATCGGA
ATGAGATAAGGCAGATCTTCACAGCTTTCGACGTGCACTATCGTGGATTTTTAACTCTAGAAGATTTCAA
GAGGGCGTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGACAGTGCTGGAGGTGTTCAGGGAGGCAGAT
CAAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGA

Translation (162 aa):
MFLSEAGARPRAGEASASERRKWVKVFKACDEDNKGYLSREDFKVAIVMLFGYKPSKIEADAVMSSVNPN
TSGVSLEGFLSAVKRKKEARLYRNEIRQIFTAFDVHYRGFLTLEDFKRAFSRVAPKLPARTVLEVFREAD
QDSDGHVSFRDFEYAMNHGQSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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