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Report for CCDS26162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26162.1 Public Mus musculus 12 Degs2 23 108 98 CCDS HistoryNCBI Gene:70059Re-query CCDS DB by CCDS ID:26162.1Re-query CCDS DB by GeneID:70059See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021691.5 ENSMUSP00000021691.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021691.5Link to Ensembl Protein Viewer:ENSMUSP00000021691.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021691Re-query CCDS DB by Protein ID:ENSMUSP00000021691
Original member Current member NCBI NM_027299.5 NP_081575.2 Accepted alive Link to Nucleotide Sequence:NM_027299.5Link to Protein Sequence:NP_081575.2Re-query CCDS DB by Nucleotide ID:NM_027299Re-query CCDS DB by Protein ID:NP_081575Link to BLAST:NP_081575.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081575.2 323 Q8R2F2-1 323 100% 0 0

Chromosomal Locations for CCDS 26162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108690464 108690610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108691894 108692636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108702161 108702242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGGTAATAGCGCGGCCCGCAGCGACTTCGAGTGGGTCTACAGCGACCAGCCGCACACCCAGAGGCGCA
AGGAGATGCTCGCCAAGTACCCAGCCATCAAGGCCCTGATGCGGCCAGACCCTCACATCAAGTGGACTGT
GTCGGGAATGGTACTGGTTCAGGTGCTGGCCTGCTGGTTAGTACGGGGACTCTCTTGGCGATGGCTGCTA
TTTTGGGCCTATGCCTTTGGTGGCTGCATCAACCACTCGCTGACACTGGCCATCCATGACATCTCGCACA
ATACTGCCTTTGGCACAAGTTGTGTCTCCCGAAACCGCTGGTTTGCCATCTTTGCTAATCTGCCCATTGG
CCTACCTTACGCTACATCCTTCAAAAAGTACCATGTGGACCACCATCGTTACCTGGGTGGAGACGGGCTG
GATGTGGATATTCCTACGAACTTCGAGGGCTGGTTCTTCTGCACGCCGGCCCGCAAGCTGCTCTGGCTGG
TGCTTCAGCCTTTCTTCTATTCACTAAGGCCTCTCTGTGTGAACCCCAAGGTAGTGACACGTATGGAGAT
CCTCAACGCCCTGGTGCAGCTAGCATTTGATGTCACCATCTTTGCCCTCTGGGGGATCAAGCCCATAGTC
TACCTTCTAGGCAGCAGCCTCCTGGGTCTGGGCCTGCACCCTATCTCTGGTCACTTTGTGGCTGAGCATT
ATATGTTCCTGAAGGGCCACGAGACTTACTCCTACTATGGACCCCTCAATTGGATCACCTTCAATGTGGG
TTACCACATGGAACACCACGACTTCCCCAGTATCCCCGGTTACTACCTGCCACTGGTGCGGAAGATTGCA
CCTGAATATTATGACCACCTGCCGCAGCACCACTCCTGGGTGAAAGTGCTCTGGGACTTCGTATTTGAGG
ACTCTATGGGACCCTACTCCAGGGTTAAGCGCAAGTGTAAGCTGGCGAAGGACCACCTGTGA

Translation (323 aa):
MGNSAARSDFEWVYSDQPHTQRRKEMLAKYPAIKALMRPDPHIKWTVSGMVLVQVLACWLVRGLSWRWLL
FWAYAFGGCINHSLTLAIHDISHNTAFGTSCVSRNRWFAIFANLPIGLPYATSFKKYHVDHHRYLGGDGL
DVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPKVVTRMEILNALVQLAFDVTIFALWGIKPIV
YLLGSSLLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHMEHHDFPSIPGYYLPLVRKIA
PEYYDHLPQHHSWVKVLWDFVFEDSMGPYSRVKRKCKLAKDHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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