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Report for CCDS2623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2623.1 Public Homo sapiens 3 RBSN 24 110 108 CCDS HistoryNCBI Gene:64145Re-query CCDS DB by CCDS ID:2623.1Re-query CCDS DB by GeneID:64145See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2623.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253699.7 ENSP00000253699.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253699.7Link to Ensembl Protein Viewer:ENSP00000253699.3Re-query CCDS DB by Nucleotide ID:ENST00000253699Re-query CCDS DB by Protein ID:ENSP00000253699
Original member Current member EBI ENST00000476527.6 ENSP00000422551.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476527.6Link to Ensembl Protein Viewer:ENSP00000422551.1Re-query CCDS DB by Nucleotide ID:ENST00000476527Re-query CCDS DB by Protein ID:ENSP00000422551
Original member Current member NCBI NM_001302378.2 NP_001289307.1 Accepted alive Link to Nucleotide Sequence:NM_001302378.2Link to Protein Sequence:NP_001289307.1Re-query CCDS DB by Nucleotide ID:NM_001302378Re-query CCDS DB by Protein ID:NP_001289307Link to BLAST:NP_001289307.1
Original member Current member NCBI NM_022340.4 NP_071735.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022340.4Link to Protein Sequence:NP_071735.2Re-query CCDS DB by Nucleotide ID:NM_022340Re-query CCDS DB by Protein ID:NP_071735Link to BLAST:NP_071735.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289307.1 784 Q9H1K0-1 784 100% 0 0
NP_071735.2 784 Q9H1K0-1 784 100% 0 0

Chromosomal Locations for CCDS 2623.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15073782 15074930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15075606 15075710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15077062 15077164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15078075 15078161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15080732 15080802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15082367 15082608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15084735 15084896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15085000 15085045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15085861 15085961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15090399 15090539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15095973 15096120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGCTTCTCTGGACGACCCAGGGGAAGTGAGGGAGGGCTTCCTCTGCCCTCTGTGCCTGAAGGATCTGC
AGTCTTTCTATCAGCTTCACTCACATTACGAGGAAGAACACTCAGGGGAAGACCGTGATGTCAAAGGGCA
AATTAAAAGTCTTGTCCAGAAGGCTAAAAAAGCAAAGGACAGGTTGTTGAAACGAGAAGGGGATGATCGA
GCAGAGTCAGGGACCCAAGGATATGAGTCTTTCAGCTATGGAGGGGTTGATCCTTACATGTGGGAACCCC
AGGAGCTTGGTGCTGTGAGAAGCCATCTTTCCGACTTCAAAAAACACCGAGCTGCTAGAATTGACCACTA
TGTTGTGGAAGTCAATAAACTAATAATCAGGTTAGAGAAGCTCACTGCATTTGACAGAACAAATACTGAG
TCTGCAAAGATTCGAGCAATAGAAAAGTCTGTGGTGCCTTGGGTCAACGACCAGGATGTCCCTTTCTGTC
CAGACTGTGGGAATAAGTTCAGCATCCGGAACCGCCGCCACCACTGCCGCCTCTGCGGGTCTATTATGTG
CAAGAAGTGTATGGAGCTCATCAGCCTTCCCTTGGCAAACAAGCTCACCAGTGCCAGCAAGGAGTCCCTG
AGCACCCACACCAGCCCCAGCCAGTCACCCAACAGTGTCCATGGCTCCCGCCGAGGCAGCATCAGCAGCA
TGAGCAGTGTCAGCTCGGTCCTGGATGAGAAGGACGATGACCGGATCCGCTGCTGTACACACTGCAAGGA
CACGCTGCTCAAGAGAGAGCAGCAGATTGATGAGAAGGAGCACACACCTGACATCGTGAAGCTCTACGAG
AAATTACGACTTTGCATGGAGAAAGTTGACCAGAAAGCTCCAGAATACATCAGGATGGCAGCATCATTAA
ATGCTGGGGAGACAACCTACAGTCTGGAACATGCCAGTGACCTTCGAGTGGAAGTGCAGAAAGTGTATGA
GCTGATAGACGCTTTAAGTAAGAAGATCTTAACCTTGGGCTTGAACCAGGACCCTCCACCACATCCAAGC
AATTTGCGGCTGCAGAGAATGATCAGATACTCAGCTACACTTTTTGTGCAGGAAAAGTTGCTTGGTTTGA
TGTCACTGCCAACCAAAGAACAGTTTGAGGAACTGAAAAAGAAAAGGAAGGAGGAAATGGAGAGGAAGAG
GGCCGTGGAGAGACAAGCTGCCCTGGAGTCCCAGCGAAGGCTTGAGGAAAGGCAGAGTGGCCTGGCTTCT
CGAGCGGCCAACGGGGAGGTGGCATCTCTCCGCAGGGGCCCTGCCCCCTTGAGAAAGGCTGAGGGCTGGC
TCCCACTGTCAGGAGGTCAGGGGCAGAGTGAGGACTCAGACCCGCTCCTCCAGCAGATCCACAACATCAC
ATCATTCATCAGGCAGGCCAAGGCCGCGGGCCGCATGGATGAAGTGCGCACTCTGCAGGAGAACCTGCGG
CAGCTGCAGGACGAGTATGACCAGCAGCAGACAGAGAAGGCCATCGAGCTGTCCCGGAGGCAGGCTGAGG
AGGAGGACCTGCAGCGGGAACAGCTGCAGATGTTGCGTGAACGGGAGTTGGAACGAGAAAGGGAGCAGTT
TCGGGTGGCATCCCTGCACACACGGACTCGGTCCCTGGACTTCAGAGAAATCGGCCCTTTTCAGCTGGAG
CCCAGCAGAGAGCCTCGCACCCACCTTGCTTATGCTTTGGATCTAGGCTCTTCCCCAGTTCCAAGCAGCA
CAGCTCCCAAGACCCCTTCACTTAGCTCAACTCAACCCACCAGAGTGTGGTCTGGGCCCCCAGCCGTTGG
CCAGGAGCGCTTACCCCAGAGCAGCATGCCACAGCAACATGAGGGGCCCTCCTTAAACCCCTTTGATGAG
GAAGACCTCTCCAGCCCCATGGAAGAGGCCACTACTGGTCCTCCTGCTGCAGGGGTTTCCTTAGACCCTT
CAGCCCGCATCCTGAAAGAGTACAATCCTTTCGAGGAAGAGGACGAGGAGGAGGAAGCAGTGGCAGGGAA
TCCATTCATTCAGCCAGACAGCCCAGCTCCTAACCCCTTCAGTGAGGAAGACGAACATCCCCAGCAGAGG
CTCTCAAGCCCTCTGGTTCCTGGTAACCCCTTTGAGGAACCCACCTGTATCAACCCCTTTGAGATGGACA
GTGACAGTGGGCCAGAGGCTGAGGAGCCCATAGAGGAAGAGCTCCTCCTGCAGCAGATCGATAACATCAA
GGCATACATCTTTGATGCCAAGCAGTGCGGCCGCCTGGATGAGGTAGAGGTGCTGACAGAGAATCTGCGG
GAGCTGAAGCACACCCTGGCCAAGCAGAAGGGGGGCACTGACTGA

Translation (784 aa):
MASLDDPGEVREGFLCPLCLKDLQSFYQLHSHYEEEHSGEDRDVKGQIKSLVQKAKKAKDRLLKREGDDR
AESGTQGYESFSYGGVDPYMWEPQELGAVRSHLSDFKKHRAARIDHYVVEVNKLIIRLEKLTAFDRTNTE
SAKIRAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCRLCGSIMCKKCMELISLPLANKLTSASKESL
STHTSPSQSPNSVHGSRRGSISSMSSVSSVLDEKDDDRIRCCTHCKDTLLKREQQIDEKEHTPDIVKLYE
KLRLCMEKVDQKAPEYIRMAASLNAGETTYSLEHASDLRVEVQKVYELIDALSKKILTLGLNQDPPPHPS
NLRLQRMIRYSATLFVQEKLLGLMSLPTKEQFEELKKKRKEEMERKRAVERQAALESQRRLEERQSGLAS
RAANGEVASLRRGPAPLRKAEGWLPLSGGQGQSEDSDPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLR
QLQDEYDQQQTEKAIELSRRQAEEEDLQREQLQMLRERELEREREQFRVASLHTRTRSLDFREIGPFQLE
PSREPRTHLAYALDLGSSPVPSSTAPKTPSLSSTQPTRVWSGPPAVGQERLPQSSMPQQHEGPSLNPFDE
EDLSSPMEEATTGPPAAGVSLDPSARILKEYNPFEEEDEEEEAVAGNPFIQPDSPAPNPFSEEDEHPQQR
LSSPLVPGNPFEEPTCINPFEMDSDSGPEAEEPIEEELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLR
ELKHTLAKQKGGTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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