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Report for CCDS26230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26230.1 Public Mus musculus 13 Pfkp 23 108 98 CCDS HistoryNCBI Gene:56421Re-query CCDS DB by CCDS ID:26230.1Re-query CCDS DB by GeneID:56421See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138703.7 ENSMUSP00000117030.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138703.7Link to Ensembl Protein Viewer:ENSMUSP00000117030.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138703Re-query CCDS DB by Protein ID:ENSMUSP00000117030
Original member Current member NCBI NM_019703.4 NP_062677.1 Accepted alive Link to Nucleotide Sequence:NM_019703.4Link to Protein Sequence:NP_062677.1Re-query CCDS DB by Nucleotide ID:NM_019703Re-query CCDS DB by Protein ID:NP_062677Link to BLAST:NP_062677.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062677.1 784 Q9WUA3-1 784 100% 0 0

Chromosomal Locations for CCDS 26230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 6581460 6581592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6582403 6582505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6584601 6584700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6586480 6586591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6587052 6587113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6588489 6588653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6597859 6598011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6598739 6598826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6600596 6600666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6602713 6602859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6603079 6603148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6603399 6603463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6604956 6605081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6605636 6605728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6614704 6614799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6619175 6619283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6619520 6619564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6620886 6621051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6621907 6622096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6625136 6625213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6635925 6635998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 6648571 6648679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGAGTGACTTGGATTCTTCGAGCTCCAGCGCCTATCCGAAGTACCTGGAGCACCTCTCTGGGGATGGCA
AAGCTATCGGTGTCCTGACCAGCGGCGGGGATGCCCAAGGCATGAATGCTGCTGTCCGCGCTGTGGTGCG
CATGGGAATCTACACGGGGGCCAAAGTGTACTTTATATATGAGGGTTACCAAGGCTTGGTGGATGGAGGC
TCCAATATTGTGGAAGCCAAATGGGACTGTGTCTCCAGCATTCTGCAAGTGGGTGGGACCATCATCGGTA
GTGCGCGCTGCAAAGCCTTTCGAAGCCGTGAAGGGCGCCTGAAAGCTGCCTGTAACTTGGCGCGCTTGGG
CATAACCAATCTGTGCGTGATCGGCGGGGACGGAAGTCTCACGGGAGCCAACCTCTTCCGAAAGGAGTGG
AGCGGACTTCTGGAAGAGCTGGCTCGGAATGGTGATATCGATAACGACACAGTGCAGAAGTATTCCTACC
TCAACGTGGTGGGTATGGTGGGCTCCATTGACAATGACTTCTGTGGCACAGACATGACCATTGGTACAGA
TTCAGCCCTGCACCGAATTATTGAAGTTGTTGATGCCATCATGACCACTGCTCAGAGCCACCAGAGGACC
TTCGTCCTGGAGGTGATGGGGAGACACTGTGGTTACTTGGCCTTGGTGAGCGCCTTGACTTGCGGTGCCG
ACTGGGTGTTCCTTCCGGAGTCTCCACCTGAGGAAGATTGGGAGGAAAATATGTGCCTCAAACTCTCAGA
GAACCGAGCCCGAAAAAAGAGGCTGAATATCATCATTGTGTCTGAAGGAGCAATCGACATGCAAAATAAG
CCAATCACCTCTGAGAAAATCAAGGAGCTTGTAGTGAAGAATTTGGGATTTGACACCCGGGTCACCATCC
TTGGGCATGTCCAACGAGGAGGGACCCCATCTGCATTTGACAGGATTTTGGCCAGCCGTATGGGAGTGGA
GGCTGTCATTGCCTTGCTGGAAGCTACCCCCGAGACCCCAGCCTGTGTCGTGTCACTAAGAGGAAACCAA
GCAGTGCGCCTGCCACTGATGGAGTGTGTGCAAATGACCCAGGATGTACAGAAGGCAATGGATGAAAGAA
GATTTAAGGAAGCCGTGAAACTCCGAGGAAGGCGTTTTGAGGGAAACCTGAACACCTATAAGCGTCTTGC
CATTAAACTGCCTGATGAGAAGATTGTCAAGAGCAACTGCAATGTAGCCGTCATCAATGTAGGGGCACCT
GCTGCCGGAATGAATGCAGCCGTGCGCTCTGCTGTTCGAGTCGGGATTGCAGACGGCCACAAGATGTTTG
CAATCTATGACGGCTTTGAAGGATTCGCCAATGGCCAAATCAAAGAAATCGGCTGGGCAGATGTCGGAGG
CTGGACTGGACAAGGAGGGTCCATTCTTGGGACAAAACGCACCCTACCTGGAAAGTACTTGGAGAAGATC
GCAGAGCAGATGCATTCCCATAGTATCAATGCCCTTCTGATCATTGGAGGATTTGAGGCCTACCTAGGAC
TCCTAGAGCTGGCAGCTGCCCGGGAGAAACATGAGGCGTTCTGTGTCCCCATGGTTATGGTTCCTGCTAC
TGTCTCCAACAATGTGCCGGGTTCCGATTTCAGCATCGGGGCAGACACAGCTCTGAACACTATCACAGAC
ACGTGCGACCGCATTAAACAGTCAGCCAGTGGGACCAAGCGCCGGGTGTTCATCATTGAGACCATGGGTG
GATACTGTGGCTACCTGGCCAACATGGGGGCCCTTGCAGCAGGAGCTGATGCTGCCTACATCTTTGAAGA
GCCATTTGATATCGGAGATTTGCAGTCCAACGTCGTGCACTTGACAGAGAAAATGAAGACCAGCATCCAG
AGGGGCCTCGTACTCAGAAACGAAAGCTGCAGTGTAAATTATACCACTGACTTCATCTACCAGCTCTACT
CAGAGGAGGGCAAAGGAGTGTTTGACTGCAGGAAAAACGTGCTGGGCCATATGCAGCAGGGGGGAGCACC
GTCTCCATTCGATAGGAACTTTGGAACCAAGATTTCTGCCAAAGCAATGGAGTGGATCTCGGCCAAACTG
AAGGGGTCCCAGGGCACAGGGAAAAAATTTGTTAGCGATGATTCCATTTGTGTCCTGGGAATTTGCAAGA
GAGATCTCCTGTTTCAACCAGTGGCAGAGCTGAAGAAAGTCACTGACTTTGAGCACAGGATCCCCAAGGA
GCAGTGGTGGCTGAAACTGCGGCCCATCATGAAGATCTTGGCCAAGTATGAGGCGAGCTATGACATGTCT
GATTCAGGCAAGCTGGAGTCCTTGCAGCACCATGAAGAACTATGA

Translation (784 aa):
MSDLDSSSSSAYPKYLEHLSGDGKAIGVLTSGGDAQGMNAAVRAVVRMGIYTGAKVYFIYEGYQGLVDGG
SNIVEAKWDCVSSILQVGGTIIGSARCKAFRSREGRLKAACNLARLGITNLCVIGGDGSLTGANLFRKEW
SGLLEELARNGDIDNDTVQKYSYLNVVGMVGSIDNDFCGTDMTIGTDSALHRIIEVVDAIMTTAQSHQRT
FVLEVMGRHCGYLALVSALTCGADWVFLPESPPEEDWEENMCLKLSENRARKKRLNIIIVSEGAIDMQNK
PITSEKIKELVVKNLGFDTRVTILGHVQRGGTPSAFDRILASRMGVEAVIALLEATPETPACVVSLRGNQ
AVRLPLMECVQMTQDVQKAMDERRFKEAVKLRGRRFEGNLNTYKRLAIKLPDEKIVKSNCNVAVINVGAP
AAGMNAAVRSAVRVGIADGHKMFAIYDGFEGFANGQIKEIGWADVGGWTGQGGSILGTKRTLPGKYLEKI
AEQMHSHSINALLIIGGFEAYLGLLELAAAREKHEAFCVPMVMVPATVSNNVPGSDFSIGADTALNTITD
TCDRIKQSASGTKRRVFIIETMGGYCGYLANMGALAAGADAAYIFEEPFDIGDLQSNVVHLTEKMKTSIQ
RGLVLRNESCSVNYTTDFIYQLYSEEGKGVFDCRKNVLGHMQQGGAPSPFDRNFGTKISAKAMEWISAKL
KGSQGTGKKFVSDDSICVLGICKRDLLFQPVAELKKVTDFEHRIPKEQWWLKLRPIMKILAKYEASYDMS
DSGKLESLQHHEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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