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Report for CCDS26273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26273.1 Public Mus musculus 13 Zscan12 23 108 98 CCDS HistoryNCBI Gene:22758Re-query CCDS DB by CCDS ID:26273.1Re-query CCDS DB by GeneID:22758See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053293.13 ENSMUSP00000058904.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053293.13Link to Ensembl Protein Viewer:ENSMUSP00000058904.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053293Re-query CCDS DB by Protein ID:ENSMUSP00000058904
Original member Current member EBI ENSMUST00000099720.2 ENSMUSP00000097308.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099720.2Link to Ensembl Protein Viewer:ENSMUSP00000097308.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099720Re-query CCDS DB by Protein ID:ENSMUSP00000097308
Original member Current member EBI ENSMUST00000225545.1 ENSMUSP00000153548.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225545.1Link to Ensembl Protein Viewer:ENSMUSP00000153548.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225545Re-query CCDS DB by Protein ID:ENSMUSP00000153548
Original member NCBI NM_016684.2 NP_057893.2 Updated not alive Link to Nucleotide Sequence:NM_016684.2Link to Protein Sequence:NP_057893.2Re-query CCDS DB by Nucleotide ID:NM_016684Re-query CCDS DB by Protein ID:NP_057893
Current member NCBI NM_016684.3 NP_057893.2 Accepted alive Link to Nucleotide Sequence:NM_016684.3Link to Protein Sequence:NP_057893.2Re-query CCDS DB by Nucleotide ID:NM_016684Re-query CCDS DB by Protein ID:NP_057893Link to BLAST:NP_057893.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057893.2 501 Q9Z1D7 501 100% 0 0

Chromosomal Locations for CCDS 26273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21363650 21364051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21366615 21366756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21368552 21369513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGACATCTACTAGTGATACCAAGGTCTGTAAGAACCAGGGTGGACTTTTGGAAATAAAAATGGAGGAAG
AA
TGTAAGTATACCACCAGACAAGATAGGAACCTACAAAAGAACACTTATAACAGAGACGTCTTCCGAAA
A
TACTTCAGACAGTTTTGCTACCAGGAAACTTCTGGACCCCGGGAGGCTCTGAGCCGGCTGCGCGAGCTC
TGC
AGACAGTGGCTGCGGCCGGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGT
TC
CTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCAGGAGCAGAATCCGGAGAGTGTGGAGGAGGT
G
GTGACTGTGCTGGAGGATTTAGAGAGAGAGCTTGATGAACTAGGATACCGGGCCTCAGTCCAAACTGAA
GAA
CAGGTAACGTTTCAGGAGGTGAAGCCTTTGGCAACAGAGCAGAAACCCAGCGTGTCCCTTCAGTTTG
TC
AAAGCCAAGCCTGGGTGTGAACTTGCAGGCCGTGAAGCCCAGGAGGAGCAAGTTTCAGGTGTTGAGAC
T
GGCAATGAGCCCAGGAATGTCACTCTAAAGCAAGGCCTCTGGGAAGGGACGGAAGCAGAACAGAATCCT
GCT
AGCAGATTAGCAAAGGATGCACTTGAGTGTGAAGAAGCTCACAACCCTGGAGAAGAGTCTTCTGGTA
TT
TCCCATGAAGACAGCCAGCCTCTGCGTAATGAAAATGGTGTAAATTCTCCTGCGAACTCAGAGTACGC
T
AAACACCAGAGCATCTGTCCAGGGAGAAAAGTGCATGGGTGTGATGAGTGTGGAAAGAGTTTTACTCAG
CAC
TCGCGCCTCATAGAGCACAAGAGAGTCCACACTGGAGACAGGCCCTACAAATGTGAAGTATGTGGGA
AA
ACTTTCCGATGGAGGACTGTTCTTATTCGACACAAGGTGGTCCACACTGGAGAGAAACCGTATAAATG
T
AATGAATGTGGCAGGGCTTTTGGCCAGTGGTCAGCACTTAACCAACATCAGAGACTTCACTCGGGAGAA
AAG
CACTACCACTGTAACGAATGTGGCAAAGCCTTTTGCCAGAAAGCAGGCCTCTTTCACCATCTCAAGA
GC
CATAGAAGAAACAGACCTTATCAATGTCTTCAGTGTAATAAAAGTTTTAATCGCCGTTCTACACTTTC
T
CAGCATCAAGGAGTTCACACTGGAGCAAAACCCTACGAATGCAACGATTGTGGGAAAGCTTTTGTTTAT
AAC
TCATCTCTTGCTACCCATCAGGAAACCCATCACAAGGAGAAACCCTTCACTCAAAGTGGTCCTATTC
AG
CAGCAGAGGAACCACACCAAGGAGAAGCCCTACAAATGCAGTGTATGTGGAAAAGCATTTATTCAAAA
A
ATAAGTCTTATAGAACACGAACAAATTCATACCGGAGAGAGACCGTATAAATGTGCTGAGGGCGGGAAG
GCC
TTTATTCAGATGTCAGAACTCACAGAACATTAG


Translation (501 aa):
MTSTSDTKVCKNQGGLLEIKMEEECKYTTRQDRNLQKNTYNRDVFRKYFRQFCYQETSGPREALSRLREL
C
RQWLRPDLNSKEQILELLVLEQFLTILPGELQAWVQEQNPESVEEVVTVLEDLERELDELGYR
ASVQTE
E
QVTFQEVKPLATEQKPSVSLQFVKAKPGCELAGREAQEEQ
VSGVETGNEPRNVTLKQGLWEGTEAEQNP
A
SRLAKDALECEEAHNPGEESSGISHEDSQPLRNENGVNSPANSEYAKHQSICPGRKVHGCDECGKSFTQ
H
SRLIEHKRVHTGDRPYKCEVCGKTFRWRTVLIRHKVVHTGEKPYKCNECGRAFGQWSALNQHQRLHSGE
K
HYHCNECGKAFCQKAGLFHHLKSHRRNRPYQCLQCNKSFNRRSTLSQHQGVHTGAKPYECNDCGKAFVY
N
SSLATHQETHHKEKPFTQSGPIQQQRNHTKEKPYKCSVCGKAFIQKISLIEHEQIHTGERPYKCAEGGK
A
FIQMSELTEH




Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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