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Report for CCDS26370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26370.1 Public Mus musculus 13 Trim38 23 108 98 CCDS HistoryNCBI Gene:214158Re-query CCDS DB by CCDS ID:26370.1Re-query CCDS DB by GeneID:214158See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074067.3 ENSMUSP00000073709.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074067.3Link to Ensembl Protein Viewer:ENSMUSP00000073709.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000074067Re-query CCDS DB by Protein ID:ENSMUSP00000073709
Original member Current member EBI ENSMUST00000226039.1 ENSMUSP00000153240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226039.1Link to Ensembl Protein Viewer:ENSMUSP00000153240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226039Re-query CCDS DB by Protein ID:ENSMUSP00000153240
Original member Current member NCBI NM_001029935.2 NP_001025106.1 Accepted alive Link to Nucleotide Sequence:NM_001029935.2Link to Protein Sequence:NP_001025106.1Re-query CCDS DB by Nucleotide ID:NM_001029935Re-query CCDS DB by Protein ID:NP_001025106Link to BLAST:NP_001025106.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025106.1 471 Q5SZ99 471 100% 0 0

Chromosomal Locations for CCDS 26370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23782572 23782988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23785877 23785972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23788211 23788441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23789335 23789357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23789458 23789570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23790960 23791495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGGCTCAGACTTTAGCACGGTGAAGATAAGAAAGGTCACTTCTTGCTCCATCTGCAAGGCCATGATGT
CTCACCCAGTGAGCATCAACTGTGGACACAGCTACTGCAAATCCTGCATACAGAGCTATTATTGCAATGT
CAGCCCAAAAACAGGGTGGAAGATGTTGGGCTGTCCTTTGTGTAGTAGTCCATTTAGCTTAGAGAACCTC
AGGCCCAACAAGGAGCTAGAAACCATAATTGATATGATCAAGGGGATGGAAGAGCAGGATCAAGACATGG
TGTGTGAGGAACATGAAGAGAAGTTCAATCGCTTTTGTGAAGATGACGGTCAACTCCTCTGCTGGCGCTG
TTATTGGGAAGATCGGCACAAAGGTCATACCTTGGCTCATGTGAAAGATGTGTACCAGAACTACAAGGAA
AAACTCCAGAACACCATGACAAAATTGCGTGAACTCCAAGAGAATCACGAAGTTCAGATACATTTCATAA
CACACCAAATAAATGCCTGGAAGGATGCTGTAGAGGATCGTCGGCAAACAATCAAGTCAAACTTCAAGAA
TCTCCAGAGTTTTCTACAGGAAGAAGAGAAGTTTTATCTTTGGAGGTTGGAAAATGAGGAAAAGGAGATG
CTGGTGCAGCTGGAAGGCAGCGAGGCCAATCTACAGCAGACGTTTGAGAGAGCTCAATGCCAAATTCAGG
AACTGGAGGCAAAATGTCAGGGCTCAGCCCAGAAATTGCTACAGGACGTGAAAAACACTTTGAGCAGGTG
TGAGGCCATGAAGCGAAACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGTAATGTGTCTGAG
CTGTACTTCGATGTGAAGACGATATTACGACGTCACCAAGTCAGCGTGATCCTGGACCCCAGCACAGCCC
ACCTTGACCTAGCTCTGACTAAAGGTGGAAGATTAGTGACTTACAAAAGATGCCCCAGGGATCTTCAGGC
AAGATCTTCAGCCAAGAGGTTTTATGGTTTACCCTGTGTCCTGGGCTGTGAGGGCTTTACTTCGGGGAGA
TATTACTTTGAAGTCTCTGTTGAGAATGCAACCAGTTGGGATTTGGGAGTCTGTGTAGAGAATGTGCACA
GGGGCTTTAACATGAAGAAGGAGCCTGAGTCTGGATTCTGGACCATCAAGATGTCTGAAGAGGACGGCCT
TGAAGCTCTTACTTCTACCCCTACTCCTCCCCTTCATCTGATTGAAAAGCCCCAGATTCTGGGAGTTTTC
CTAGACTATGAGGCTGGAGCTGTATCGTTTTACAGTGTAACTACTGGCTCTCATATCTTCACCTTCCCTA
AGGCTTCCTTCCAGGATACTCTGAGGCCCTTTTTCCAGGTTTATCAATATTCTCCTTTGTTCCTGCCTGC
CATAAATAATCAATGA

Translation (471 aa):
MGSDFSTVKIRKVTSCSICKAMMSHPVSINCGHSYCKSCIQSYYCNVSPKTGWKMLGCPLCSSPFSLENL
RPNKELETIIDMIKGMEEQDQDMVCEEHEEKFNRFCEDDGQLLCWRCYWEDRHKGHTLAHVKDVYQNYKE
KLQNTMTKLRELQENHEVQIHFITHQINAWKDAVEDRRQTIKSNFKNLQSFLQEEEKFYLWRLENEEKEM
LVQLEGSEANLQQTFERAQCQIQELEAKCQGSAQKLLQDVKNTLSRCEAMKRNPLKADPLKVHTKCNVSE
LYFDVKTILRRHQVSVILDPSTAHLDLALTKGGRLVTYKRCPRDLQARSSAKRFYGLPCVLGCEGFTSGR
YYFEVSVENATSWDLGVCVENVHRGFNMKKEPESGFWTIKMSEEDGLEALTSTPTPPLHLIEKPQILGVF
LDYEAGAVSFYSVTTGSHIFTFPKASFQDTLRPFFQVYQYSPLFLPAINNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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