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Report for CCDS26388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26388.1 Public Mus musculus 13 Hdgfl1 23 108 98 CCDS HistoryNCBI Gene:15192Re-query CCDS DB by CCDS ID:26388.1Re-query CCDS DB by GeneID:15192See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055915.5 ENSMUSP00000057557.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055915.5Link to Ensembl Protein Viewer:ENSMUSP00000057557.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055915Re-query CCDS DB by Protein ID:ENSMUSP00000057557
Original member Current member NCBI NM_008232.3 NP_032258.2 Accepted alive Link to Nucleotide Sequence:NM_008232.3Link to Protein Sequence:NP_032258.2Re-query CCDS DB by Nucleotide ID:NM_008232Re-query CCDS DB by Protein ID:NP_032258Link to BLAST:NP_032258.2

Chromosomal Locations for CCDS 26388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 26769237 26770088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGTCTTGCTTCAGCCGCTCTAAGTACAAGACCGGGGACCTGGTGTTTGCCAAGTTAAAGGGCTATGCCC
ACTGGCCAGCGAGGATCGAACATGTCGCTGAAGCCAACCGCTACCAGGTGTTCTTCTTCGGGACCCATGA
GACCGCCCTGCTGGGTCCCAGGCACCTGTTCCCTTATGAGGAGTCCAAAGAGAAGTTCGGCAAGCCCAAC
AAGAGGCGCGGCTTCAGCGAGGGGCTGTGGGAGATCGAGCACGACCCTATGGTTGAGGCCTCCTCTAGCC
TGTGCTCAGAAGAGGATCAGAGCTACACAGAGGATCCTGGGCTAGCAGAGGAGCCGGAACTAGGACAGGA
GCTGGTGCAGGAGCTGGAGCCCGAATTCATGCCTGAGCTGGAGGCAGAACCTGAGATGCCTGAGACCGAG
TGTGAACAGGAGCCCGAGCCCCAGCCTGCCTATGACCTGCTGGACGCCGTGGAGGAGCCGGGCCTCACCA
AGGCCGAGCCAGGAGATCAGCAAGCCGAGCATGTGCAAGAGAAGCACCCTGAGGTGGAGGCAGAGGCTGA
GGCTGAGGCTGAGGCCGAGGCAGAGGCGGAGGCGGAGGCCAAGGCTGAGGTGGAGGAGCCGGGGAGTCTG
AAGAGGAGCGCGGAGGATGAAGAGCCTCATTGTCCTCTCAAACGGCCCAGGGAGGCGGCTCCTGGTGCGT
TGGAGATGGAGCCTGCTGAAGAGCGCGAGGCTGAGGCCTGCCCCTTCGTGGAGGAGCCTGACCAAGCCCA
GGAGCAGCTGCCTCCGTTGGAGGAAGAGGCCACAGAAAAGGCGGTCCAGGGCCTGATTGTTGGAGAAATA
GAAGGCCTGTAG

Translation (283 aa):
MSCFSRSKYKTGDLVFAKLKGYAHWPARIEHVAEANRYQVFFFGTHETALLGPRHLFPYEESKEKFGKPN
KRRGFSEGLWEIEHDPMVEASSSLCSEEDQSYTEDPGLAEEPELGQELVQELEPEFMPELEAEPEMPETE
CEQEPEPQPAYDLLDAVEEPGLTKAEPGDQQAEHVQEKHPEVEAEAEAEAEAEAEAEAEAKAEVEEPGSL
KRSAEDEEPHCPLKRPREAAPGALEMEPAEEREAEACPFVEEPDQAQEQLPPLEEEATEKAVQGLIVGEI
EGL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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