NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26404.1 Public Mus musculus 13 Prl7a2 23 108 98 CCDS HistoryNCBI Gene:19114Re-query CCDS DB by CCDS ID:26404.1Re-query CCDS DB by GeneID:19114See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006660.6 ENSMUSP00000006660.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006660.6Link to Ensembl Protein Viewer:ENSMUSP00000006660.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000006660Re-query CCDS DB by Protein ID:ENSMUSP00000006660
Original member Current member NCBI NM_011168.4 NP_035298.1 Accepted alive Link to Nucleotide Sequence:NM_011168.4Link to Protein Sequence:NP_035298.1Re-query CCDS DB by Nucleotide ID:NM_011168Re-query CCDS DB by Protein ID:NP_035298Link to BLAST:NP_035298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035298.1 253 O54831 253 100% 0 0

Chromosomal Locations for CCDS 26404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27659057 27659281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27660865 27661044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27662672 27662779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27665056 27665094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27665878 27666056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27667964 27667994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGTCATTTTCTTTCTCTCAACCATGCCCCTCAGGGGCACTTCTGCTGGTGGTGGTGTCAAGCCTCCTTT
TA
TGGGAGAATGTGGCCTCTGTACCTTTGAGTAGCAATGAGACTGATGGTTATCCATTATCCATCAATGG
G
CTGTTTCATAATGCCATGAGACTAACTTGGAATATCAAAAACCTCAACATGGAACTGCGCAAGACATAT
ACA
GTCAATCAAGTCTCTGAAAAATTATACGAGAACTATATGCTTGACTTTATTGAGGACATGGAGTATC
TG
GTCAAGGCTCTCACCTGCTGCCACAATTATTCCATCAAAACTCCAGAAAACCTGGACGAAGCTCAACA
G
ATTCCTTTTAACGAATTTCCAAAGCTGATCCTCAGTAGAATGTGGGCTTGGAATGAAACTTCTAAAGTT
CTA
CTGACCACACTCAGAAGTATTCCAGGAATGCATGATGATGTCATTTCATTAGCCAAAAACATTGAAA
CA
AAACTTGCAGAGCTTTTTGAGTACACCCAGAGTATACTCAACTCGATTTATGGAACAACAACAACAGG
A
AATGTGGAATACACCGTCTTTTCTGGTCTTGAAGACTTAAAATCATCTGATGAAGAATTTAGTCTTTTT
GAC
CTTTGTAAATTTTCCTATTGCTTACGTGTAGATATACATATGGTTGAACTTTATCTCAAGCTATTAG
AG
TGTGTGGTATATGTTAGTAGTGATGTTTGTTTATCCAAAAATATTAGAGATGCTTCATGA


Translation (253 aa):
MSFSFSQPCPSGALLLVVVSSLLLWENVASVPLSSNETDGYPLSINGLFHNAMRLTWNIKNLNMELRKTY
T
VNQVSEKLYENY
MLDFIEDMEYLVKALTCCHNYSIKTPENLDEAQQIPFNEFPKLILSRMWAWNETSKV
L
LTTLRSIPGMHDDVISLAKNIETKLAELFEYTQSILNS
IYGTTTTGNVEYTVFSGLEDLKSSDEEFSLF
D
LCKFSYCLRVDIHMVELYLKLLECVVYVSSDVCLSKNIRDAS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser