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Report for CCDS26495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26495.1 Public Mus musculus 13 Ptpdc1 23 108 98 CCDS HistoryNCBI Gene:218232Re-query CCDS DB by CCDS ID:26495.1Re-query CCDS DB by GeneID:218232See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035824.10 ENSMUSP00000047374.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035824.10Link to Ensembl Protein Viewer:ENSMUSP00000047374.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000035824Re-query CCDS DB by Protein ID:ENSMUSP00000047374
Original member Current member NCBI NM_207232.2 NP_997115.1 Accepted alive Link to Nucleotide Sequence:NM_207232.2Link to Protein Sequence:NP_997115.1Re-query CCDS DB by Nucleotide ID:NM_207232Re-query CCDS DB by Protein ID:NP_997115Link to BLAST:NP_997115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997115.1 747 Q6NZK8-1 747 100% 0 0

Chromosomal Locations for CCDS 26495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48579736 48579843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48580755 48580865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48583085 48583270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48585932 48587178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48589120 48589257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48590287 48590405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48590626 48590706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48592486 48592657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48606273 48606354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGGCCGCAGGAGTCTTGCCACAGAATGAAGATCCATATTCCACGTTGGTGAATAGCAGTGGGCATGCTG
CACACATGGATGAAAATTCAGGACGCCCAGCACCAAAATACACGAAAGTGGGAGAACGTTTGCGGCATGT
CATCCCTGGGCACATGGCATGTTCCATGGCGTGTGGTGGGAGAGCGTGTAAGTATGAGAACCCAGCCCGC
TGGAGTGAGCAGGAGCAAGCCATTAAGGGAGTATACTCATCCTGGGTCACTGACAATATCCTGGCCATGG
CTCGTCCGTCCTCCGAGCTGCTGGAGAAGTATCGCATCATCGAGCAGTTCCTCGGTCAAGGCATAAAAAC
AATAATCAACCTGCAGCGCCCTGGAGAGCATGCCAGCTGTGGGAGCGCTCTGGAACAAGAAAGTGGTTTC
ACCTACCTTCCTGAGGCATTCATGGAGGCTGGCATTTATTTCTACAACTTTGGGTGGAAGGATTATGGCG
TGGCTTCCCTCACTGCCATCTTGGACATGGTAAAGGTGATGACATTTGCCTTACAGGAAGGGAAAGTGGC
TGTCCACTGCCACGCGGGGCTCGGCCGCACAGGTGTGCTAATAGCATGTTATTTAGTTTTTGCAACAAGA
ATGACTGCTGACCAAGCAATTATATTTGTTCGGGCAAAACGCCCCAATTCCATACAAACAAGAGGACAAC
TGCTCTGTGTACGGGAATTCACGCAGTTCCTGGCTCCACTCCGTAATATTTTCTCTTGCTGTGACCCCAA
AGCACATGCTGTTACCTTAGCCCAGTACCTGATTCGCCAGCGACATCTGCTTCATGGCTACGAGGCACGA
CTTCTGAAGTACGTGCCGAAGATCATCCACCTGGTTTGCAAACTGCTGCTTGACTTGGCTGAGAACCGGC
CAGTGGTGATGAAGAGCATGCTAGAAGGACCTGTGCTCTCTGCTGAAATCGAAAAGACCGTGTCTGAGAT
GGTCACGCTGCAGCTAGATCAAGAGTTACTCAGGCAAAACAGTGATGTGCCCGACCCGTTTAACCCCACT
GCAGAGGTGGCCGAGTTCGAGAATCAGGATGTGATTCTCTCTACTGAGCAGGAGTTTGACCCCCTCTGGA
AGAGGAGGGATATTGAGTGCCTTCAGCCCCTGACACATCTGAAAAGACAGCTCAGCTACAGCGACTCAGA
CTTAAAGAGGGCCAAAGCCATCCTGGAACAAGGGGAGACACCTTGGACAGTGCCTGCCCAGGAGTTGCTA
GACCACAGTCTCCAGCATCAGAAGCCCACGAGCCATTGCTACATGCCACCAACTCCAGAGCTGGGTTTTA
ATAAGGAGGCACTGGTCCAAAATACCTTTTCTTTCTGGACTCCGTCAAAGTGTGGAGGCTTAGAAGGACT
GAAGGATGAGGGATCGCTGCTTTTGTGCAGGAAGGACATTCCAAAGGAAGTACAGCGGAGCAGAACCTTC
TCTGTGGGTGTTTCTTGTTCACACAATCCTGGAGAGCCAGTGCCGCCCAACTTCACAAGTATCCATAAGG
ATCCAGAGCAGGTCACCCATTGCCGGTGTGAGGCTCCTGGTGGCTGGGTCCCGGGCCCTGTTCACGAGAT
GGTCAGGAGCCCCTGTAGCCCTCTGAACTGTGGCTCCAGTCCTAAGGCGCAGTTCCCACACGGACAGGAA
ACCCAAGACAGCACAGACCTGTCTGAGGCAGTGCCGCATGCTGGTCTGCAGCCTGAACTGAGTGCTGAAG
CAAGGAGAATACTGGCGGCCAAAGCCCTGGCAAACTTAAATGAGTTTGTTGAAAAGGAGGAAGTGAAAAG
GAAAGTGGAGATGTGGCAGAAAGAACTAAATTCCCGGGAGGAAGCCTGGGAACGAATATGCGGCGAGAGA
GACCCTTTCATCTTGTGCAGTTTGATGTGGTCTTGGGTTGAGCAACTGAAAGAGCCTGTAATCACCAAAG
AGGATGTGGACATGCTGGTCGACAGACAAGCAGATGCTGCCGAAGCCCTGTTTTTACTAGAGAAGGGGCA
GTACCAGACCATCCTCTGTGTGCTGCACTGCATAGTGAGCCTGCAGACGCTTCCCATGGAGGTGGAGGAA
GCTTGCCTTTTACATGCCATTAAAGCTTTCACCAAGGTTAATTTTGATTCTGAAAACGGACCAATAGTTT
ACGACACCTTGAAAAAAATATTTAAGCACACGTTGGAAGAAAAGAGGAAAATGGCAAAAGACAGCCTCTC
CTGA

Translation (747 aa):
MAAGVLPQNEDPYSTLVNSSGHAAHMDENSGRPAPKYTKVGERLRHVIPGHMACSMACGGRACKYENPAR
WSEQEQAIKGVYSSWVTDNILAMARPSSELLEKYRIIEQFLGQGIKTIINLQRPGEHASCGSALEQESGF
TYLPEAFMEAGIYFYNFGWKDYGVASLTAILDMVKVMTFALQEGKVAVHCHAGLGRTGVLIACYLVFATR
MTADQAIIFVRAKRPNSIQTRGQLLCVREFTQFLAPLRNIFSCCDPKAHAVTLAQYLIRQRHLLHGYEAR
LLKYVPKIIHLVCKLLLDLAENRPVVMKSMLEGPVLSAEIEKTVSEMVTLQLDQELLRQNSDVPDPFNPT
AEVAEFENQDVILSTEQEFDPLWKRRDIECLQPLTHLKRQLSYSDSDLKRAKAILEQGETPWTVPAQELL
DHSLQHQKPTSHCYMPPTPELGFNKEALVQNTFSFWTPSKCGGLEGLKDEGSLLLCRKDIPKEVQRSRTF
SVGVSCSHNPGEPVPPNFTSIHKDPEQVTHCRCEAPGGWVPGPVHEMVRSPCSPLNCGSSPKAQFPHGQE
TQDSTDLSEAVPHAGLQPELSAEARRILAAKALANLNEFVEKEEVKRKVEMWQKELNSREEAWERICGER
DPFILCSLMWSWVEQLKEPVITKEDVDMLVDRQADAAEALFLLEKGQYQTILCVLHCIVSLQTLPMEVEE
ACLLHAIKAFTKVNFDSENGPIVYDTLKKIFKHTLEEKRKMAKDSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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