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Report for CCDS26611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26611.1 Public Mus musculus 13 Mterf3 23 108 98 CCDS HistoryNCBI Gene:66410Re-query CCDS DB by CCDS ID:26611.1Re-query CCDS DB by GeneID:66410See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021991.10 ENSMUSP00000021991.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021991.10Link to Ensembl Protein Viewer:ENSMUSP00000021991.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021991Re-query CCDS DB by Protein ID:ENSMUSP00000021991
Original member Current member NCBI NM_025547.4 NP_079823.2 Accepted alive Link to Nucleotide Sequence:NM_025547.4Link to Protein Sequence:NP_079823.2Re-query CCDS DB by Nucleotide ID:NM_025547Re-query CCDS DB by Protein ID:NP_079823Link to BLAST:NP_079823.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079823.2 412 Q8R3J4 412 100% 0 0

Chromosomal Locations for CCDS 26611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 66912184 66912378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66914627 66914788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66916613 66916684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66917026 66917173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66922756 66922945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66928170 66928322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66929885 66930203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGGCTCTGTTAGCCCAACAGTTACCCAGACGGTTCAACTCAGTTAAGTTGACTAGCTTCATTAAAGCCA
AACAAGTCACCAAACGCTCTGCAAGAGCAGGAAAAGCCGTGTTGCCCGGCTTCTCAGCTCAGCCTCTGCT
CTCCTCTGACACGAGCTTTCTCCGGCGGGGAATTAAGACTTACAGGACTTTGTTCTGGAATCGTTTCCAT
TCTGCCAGCACAAATAGGACAAAGAGTTCTGCCGAAAGCACTCTGCTTCCTTCAGTGGCTGAACAGCAGG
AGAGGATACTTAGTCTTGAATCAGAGCTGCCTCTTGAAGAAGTGGATGACCTGCCTCCATTGTCTCCGTT
ACAGTCAGTTTCAGAGGAGGAGGCTATTCAGATTGCTGCGTACTCTCCGCTGCCCATCTCCTCCTTCACA
CTTGCAGATTACGTAGACCATTCCAAGACTCTGCAGAAGCTAGTGCAGCTTGGAGTGGATTTGTCTAAGA
TAGAAAAACATCCAGATGCAGCCAACCTCCTTCTAAGGCTGGATTTTGAAAAGCACATTAAGCAAATACT
GCTATTTCTTAAAGATTTGGGTTTAGAAGATAACCAGCTGGGACCATTTCTGACAAAAAATTATGCTATT
TTCTCTGAAGACCTTGAAAACCTTAAGACCAGAGTAGCTTATCTACAGTCAAAAAATTTCAGTAAGACAG
ACATTGCACGGATGGTCAAAAATGCACCATTTCTGTTGAGCTTCTCCGTGGAAAGACTAGATAACAGACT
GGGATTTTTTCAGAAAGAACTTGAACTGAATGTGAAGAAGACTAGAGATCTGGTTGTTCGCCTTCCAAGG
CTACTAACAGGAAGTCTGGAGCCTGTGAAGGAAAACATGAAGGTTTATCATCTTGAACTTGGTTTTAAAC
ATAATGAAATTCAACATATGGTCATCAAGATTCCTAAGATGCTAACTGCAAACAAAAGAAAACTTACAGA
GATTTTTGATTATGTACACAATGTGATGAATATTCCCCACCACATCATCGTCAAGTTTCCACAGTTATTT
AACACAAGAGTGTTTAAAATTAAAGAAAGACACTTGTTTCTTGCCTACCTGGGAAGAGCACAGTATGACC
CAGCAAAACCTAACTATGTTTCTTTGGACAAGTTCGTATCTTTTCCTGATAAAATATTTTGTAAAGAGAT
TGCCAAAGCTTCACTAAATGATTTTGAGAAATTCTTAAAAACGCTTTAG

Translation (412 aa):
MALLAQQLPRRFNSVKLTSFIKAKQVTKRSARAGKAVLPGFSAQPLLSSDTSFLRRGIKTYRTLFWNRFH
SASTNRTKSSAESTLLPSVAEQQERILSLESELPLEEVDDLPPLSPLQSVSEEEAIQIAAYSPLPISSFT
LADYVDHSKTLQKLVQLGVDLSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAI
FSEDLENLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVERLDNRLGFFQKELELNVKKTRDLVVRLPR
LLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLF
NTRVFKIKERHLFLAYLGRAQYDPAKPNYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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